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Re: How to access RDF for NeuroFibrillaryTangle (NFT) microarray study?

From: Maryann Martone <maryann@ncmir.ucsd.edu>
Date: Tue, 10 May 2011 19:24:34 -0700
Cc: Anita Bandrowski <bandrow@gmail.com>, Michael Miller <mmiller@systemsbiology.org>, HCLS <public-semweb-lifesci@w3.org>, "jgrethe@ucsd.edu Jeffrey" <jgrethe@ucsd.edu>, Amarnath Gupta <gupta@sdsc.edu>
Message-Id: <E9457F90-AC95-49E0-959A-2C105C90AA2C@ncmir.ucsd.edu>
To: "M. Scott Marshall" <mscottmarshall@gmail.com>
Hi Scott:

Not sure whether we've exported these in RDF yet, but added Jeff and  
Amarnath to this thread.


On May 10, 2011, at 2:36 PM, M. Scott Marshall wrote:

> Hi Anita,
> Following up on our previous conversation, Michael Miller (CC'd)
> looked into getting a NIF version of RDF for one of the NFT microarray
> data sets that we've represented in RDF so that we could compare but
> wasn't sure how to proceed. Could you help us?
> We are looking into harmonizing representations and documenting what
> we find as a relatively stable target for RDF representations in a W3C
> note.
> http://neuinfo.org/nif/nifgwt.html?query="nifall"&category=Nervous
> System Level:Microarray then add GSE4757 to search
> <mscottm> Michael: I will look into the NIF version of our datasets.
> <Zakim> +SatyaSahoo
> <michael> and GSE5281 also returns a hit
> <michael> but it isn't clear to me how to use this info within NIF
> </QUOTE>
> Something completely different: Have you heard of the Enigma Project?
> I thought that it was housed at UCSD but couldn't google it. It
> involves radiomics (mapping omics to brain image data). I heard about
> it at a BBMRI (biobanking) conference last year.
> Cheers,
> Scott
> -- 
> M. Scott Marshall, W3C HCLS IG co-chair, http://www.w3.org/blog/hcls
> http://staff.science.uva.nl/~marshall

Maryann Martone, Ph. D.
Department of Neuroscience
University of California, San Diego
San Diego, CA 92093-0446

Received on Wednesday, 11 May 2011 02:25:05 UTC

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