- From: Chris Mungall <cjmungall@lbl.gov>
- Date: Mon, 10 Sep 2018 12:15:31 -0700
- To: "Xi Jin" <xij@isi.edu>
- Cc: semantic-web@w3.org
- Message-ID: <0AEFC50A-5719-4F29-984D-968794637F66@lbl.gov>
Nice tool! Regarding the JSON configuration, given that we have a number of different tools for automatically or semi-automatically rendering RDF/OWL graphs in GraphViz, D3, etc, are other people interested in coming up with a minimal standard for configuring displays? For example, maybe we want to render instances of particular types with a given color or shape, or show particular predicates using particular edge glyphs As as strawman, this is a brief description of the JSON stylesheet 'language' I use in my ontology visualization tools: https://github.com/cmungall/obographviz#stylesheets It's probably overfitted towards my own use cases, but I post here for any inspiration. On 9 Sep 2018, at 16:57, Xi Jin wrote: > On Sep 8, 2018, at 4:10 PM, Chaals Nevile > <chaals@yandex.ru<mailto:chaals@yandex.ru>> wrote: > > On Sat, 08 Sep 2018 04:27:00 +0200, Pedro Szekely > <szekely@usc.edu<mailto:szekely@usc.edu>> wrote: > > My student Xi Jin wrote a simple RDF visualization tool: > https://github.com/fatestigma/ontology-visualization<https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_fatestigma_ontology-2Dvisualization&d=DwMFaQ&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=2vQ8FSZ8p1fQX868IsODUA&m=rCyOzQsB2vaKJcGmVAJ-PM7mxmlnrtpY4XGG7WSttFQ&s=Fmgx-1kAQHVlCbFd30pGVfwp9wtEwIDbrpsWt7vLsXQ&e=> > Here is an example output > > Nice work Xi Jin! > > This reminds me of Damian Steer's tool from so many years ago that I > have forgotten its name (but someone probably knows - danbri?). Are > the colours configurable? (The original ask was for black and white > printing, and black on blue is tough even for me to read on the > screen). > > > I just updated my repository > (fatestigma/ontology-visualization<https://github.com/fatestigma/ontology-visualization>) > with colors configuration. > > In order to make it b&w, you can pass a JSON format configuration like > following (it supports MATLAB-stype, HEX, and common color name): > > { > "colors": { > “class”: "k", > “literal": "black", > “instance": "#000000", > "filled": false > } > } > > Example output looks like: > > [cid:E49E1874-AF79-4266-961B-6FD580CDE81A] > > > cheers > > Chaals > > <Mail Attachment.png> > > > Pedro Szekely > Principal Scientist / USC Information Sciences Institute > Research Director / Center on Knowledge Graphs, USC/ISI > Research Associate Professor / USC Viterbi Computer Science Department > pedro szekely<http://isi.edu/~szekely> | kg > center<https://urldefense.proofpoint.com/v2/url?u=http-3A__usc-2Disi-2Di2.github.io_home_&d=DwMFaQ&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=2vQ8FSZ8p1fQX868IsODUA&m=rCyOzQsB2vaKJcGmVAJ-PM7mxmlnrtpY4XGG7WSttFQ&s=t7miAh7qIqDbgPQePrcWqUWgUfvUgWU2cAuBWOzbLWs&e=> > | 562.889.3149 > > On Sep 7, 2018, at 3:20 PM, Hans Teijgeler > <hans.teijgeler@quicknet.nl<mailto:hans.teijgeler@quicknet.nl>> wrote: > > I use Visio. It can export to: > <Visio-export-formats.png> > > > > On 7-9-2018 14:26, thomas lörtsch wrote: > ________________________________ > Please forgive the very secular nature of this question. > I have to draw a few RDF graphs as diagrams. They should look crisp > and tidy, black&white. Is there some software that everybody uses when > preparing a scientific paper? Or is it just either CorelDraw or > PostScript commands written in TextEdit? > Thanks a lot, > [0] > https://www.w3.org/TR/swbp-n-aryRelations/<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.w3.org_TR_swbp-2Dn-2DaryRelations_&d=DwMDaQ&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=2vQ8FSZ8p1fQX868IsODUA&m=v5Z9J1UaLsKuce8a-Gmq_qWrGqzdQVRYJeufBi1fWRM&s=wq8PixdlztA3RYAdBo9oIOR4s9jbvWl3d3deUtPf_DY&e=> > > The W3C Note on N-ary relations [0] has some nice looking graphs too. > Many LOD publications [1][2] seem to use a similar tool or template. > This is probably too colorful for a paper but I do like the style. > Does someone know what they used? > > > > Thomas > > > > > [1] > http://linkeddata.org/<https://urldefense.proofpoint.com/v2/url?u=http-3A__linkeddata.org_&d=DwMDaQ&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=2vQ8FSZ8p1fQX868IsODUA&m=v5Z9J1UaLsKuce8a-Gmq_qWrGqzdQVRYJeufBi1fWRM&s=xQdeja787JWB4CsHptobOCyIFDVNXXNyQtLBwrauKvg&e=> > > [2] > https://www.w3.org/TR/void/<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.w3.org_TR_void_&d=DwMDaQ&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=2vQ8FSZ8p1fQX868IsODUA&m=v5Z9J1UaLsKuce8a-Gmq_qWrGqzdQVRYJeufBi1fWRM&s=MCoYvEUBT7kCIrO3W0iluzFOjStUFIx3vdVVEr1deFE&e=> > > > > [https://ipmcdn.avast.com/images/icons/icon-envelope-tick-green-avg-v1.png]<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.avg.com_email-2Dsignature-3Futm-5Fmedium-3Demail-26utm-5Fsource-3Dlink-26utm-5Fcampaign-3Dsig-2Demail-26utm-5Fcontent-3Demailclient&d=DwMDaQ&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=2vQ8FSZ8p1fQX868IsODUA&m=v5Z9J1UaLsKuce8a-Gmq_qWrGqzdQVRYJeufBi1fWRM&s=f5VCern5iW52-Nk-ETND7w71UJxTX70ns2TnsDL-xGU&e=> > Virusvrij. > www.avg.com<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.avg.com_email-2Dsignature-3Futm-5Fmedium-3Demail-26utm-5Fsource-3Dlink-26utm-5Fcampaign-3Dsig-2Demail-26utm-5Fcontent-3Demailclient&d=DwMDaQ&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=2vQ8FSZ8p1fQX868IsODUA&m=v5Z9J1UaLsKuce8a-Gmq_qWrGqzdQVRYJeufBi1fWRM&s=f5VCern5iW52-Nk-ETND7w71UJxTX70ns2TnsDL-xGU&e=> > <x-msg://38/#DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2> > > > > > -- > Chaals: Charles (McCathie) Nevile find more at > https://yandex.com<https://urldefense.proofpoint.com/v2/url?u=https-3A__yandex.com&d=DwMFaQ&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=2vQ8FSZ8p1fQX868IsODUA&m=rCyOzQsB2vaKJcGmVAJ-PM7mxmlnrtpY4XGG7WSttFQ&s=_iob8TMORq5XJZCq2PTfeGtkNcD3fo95XXs88KAPoj4&e=> > Using Opera's long-abandoned mail client: > http://www.opera.com/mail/<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.opera.com_mail_&d=DwMFaQ&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=2vQ8FSZ8p1fQX868IsODUA&m=rCyOzQsB2vaKJcGmVAJ-PM7mxmlnrtpY4XGG7WSttFQ&s=HFC9X3VCuLoQsmgzIIgVhPRyu1sLV_utgOyqwpgG2MI&e=> > Is there really still nothing better? > > > Xi Jin > M.S. Student > Computer Science (General) > University of Southern California > Email: xij@usc.edu<mailto:xij@usc.edu>, > xij@isi.edu<mailto:xij@isi.edu>
Received on Monday, 10 September 2018 19:16:01 UTC