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AgroPortal 1.4 (beta) released - Harnessing the power of metadata

From: Clement Jonquet <jonquet@lirmm.fr>
Date: Tue, 4 Jul 2017 11:25:05 +0200
To: <agroportal-support@lirmm.fr>
Cc: <agroportal-users@lirmm.fr>
Message-ID: <03d601d2f4a7$8054e9d0$80febd70$@lirmm.fr>
Title: Harnessing the power of metadata to visualize the landscape of
agronomical ontologies



The new metadata model (release 1.3) has allowed us to implement additional
features to leverage the power of metadata within the portal: 

*	An ontology landscape page that displays diagrams and charts about
all the ontologies on the portal:  <http://agroportal.lirmm.fr/landscape>
http://agroportal.lirmm.fr/landscape . Please check this out and send
*	A few changes to the ontology Summary page e.g.,

*	A list of "additional metadata properties" for which, the backend
values are stored with standard URIs whenever possible.
*	"Get my metadata back" buttons which allow ontology developers to
download the metadata that has been edited on the portal in RDF/XML, JSON-LD
or N-triple syntax in order to copy/paste it in the original ontology file.


In conjunction with the PractikPharma / SIFR projects (annotation of French
clinical text with ontologies) we have implemented additional features
within the Annotator, including:

*	Plugin-in the NegEx/Context algorithm to detect negation or
temporality for annotations. E.g.
*	Additional output formats for the annotations (e.g.,  BRAT or Quaero
corpus format)  


Among the content change of this release we can mention:

*	Projects from the AgBioData group
*	Metadata population and curation for each ontology (feel free to
send feedback or edit)
*	Harmonisation of metadata fields (e.g., organization names, ontology
types, languages, etc.)
*	New vocabularies and ontologies such as: GACS (Global Agricultural
Concept Scheme), Soy ontology, Foodie 


This release includes code merge with NCBO BioPortal (5.3.0). See the
release notes for more details on additionnal features:


Bug fixes of this release include: 

*	Multilingual synonyms are not indexed anymore
*	Fix the partial parsing of big SKOS resources
*	Indexation of properties (see NCBO release notes)
*	Fix a few bugs in the front user interface cache 
*	Optimisation of metadata retrieval by ontology submission
*	Automatic synchronization of groups and slices


We are pleased to announce that AgroPortal will be featured during
<https://workshop.inra.fr/in-ovive-2017> IN-OVIVE 2017 workshop and
<http://www.efita2017.org/> EFITA 2017 conference's demonstration session
in Montpellier, week of July 3rd, 2017.


Contact us at  <mailto:agroportal-support@lirmm.fr>


AgroPortal release notes:


Best regards

The AgroPortal team ;)



Dr. Clement JONQUET  -  PhD in Informatics  -  Assistant Professor
University of Montpellier

Coordinator of the  <http://www.lirmm.fr/sifr/> SIFR and
<http://agroportal.lirmm.fr/> AgroPortal projects

Visiting scholar, Stanford University (EU Marie Curie fellow)


 <mailto:jonquet@lirmm.fr> jonquet@lirmm.fr

 <http://www.lirmm.fr/~jonquet> http://www.lirmm.fr/~jonquet 


@Montpellier : +33/4 67 14 97 43

@Stanford       : +1 650 723 6725




Received on Tuesday, 4 July 2017 09:26:14 UTC

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