[w3c/manifest] Add scope conflict section about same-origin and nested scopes (PR #1034)

Closes #539

This change (choose at least one, delete ones that don't apply):

* Adds new normative recommendations or optional items

Implementation commitment (delete if not making normative changes):

* [ ] WebKit (https://bugs.webkit.org)
* [x] Chromium (https://bugs.chromium.org/)
* [ ] Gecko (http://bugzilla.mozilla.org)


Commit message:

Elaborate recommendations around scope conflicts like same-origin scopes, nested scopes, etc.

Person merging, please make sure that commits are squashed with one of the following as a commit message prefix:

* chore:
* editorial:
* BREAKING CHANGE:
* And use none if it's a normative change

You can view, comment on, or merge this pull request online at:

  https://github.com/w3c/manifest/pull/1034

-- Commit Summary --

  * Add scope conflict section

-- File Changes --

    M index.html (53)

-- Patch Links --

https://github.com/w3c/manifest/pull/1034.patch
https://github.com/w3c/manifest/pull/1034.diff

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