- From: Jiang, Guoqian, M.D., Ph.D. <Jiang.Guoqian@mayo.edu>
- Date: Thu, 26 Mar 2020 22:40:57 +0000
- To: W3c Semweb HCLS <public-semweb-lifesci@w3.org>
- Cc: Harold Solbrig <solbrig@jhu.edu>, David Booth <david@dbooth.org>, Eric Prud'hommeaux <eric@w3.org>, "Stone, Daniel J." <Stone.Daniel@mayo.edu>
We have updated the release of CORD-19-on-FHIR in accordance with the latest CORD-19 dataset, and we have expanded the set of semantic annotations. The latest CORD-19 dataset contains metadata on 44,000 coronavirus-related research articles through 2020-03-20. Of these, 29,000 are full text. The latest CORD-19-on-FHIR release now has semantic annotations for: - Condition: 182231 instances - Medication: 32069 instances - Procedure: 100260 instances This release also adds semantic annotations produced by Pubtator: - Species 2030458 instances - Gene 1235829 instances - Disease 1036954 instances - Chemical 778872 instances - CellLine 76816 instances - Mutation 33413 instances - Strain 26573 instances More details and download URL are in the original announcement below. Sincerely, Guoqian Jiang (Mayo Clinic), Harold Solbrig (Johns Hopkins University), and FHIRCat team On 3/19/20, 10:42 PM, "Jiang, Guoqian, M.D., Ph.D." <Jiang.Guoqian@mayo.edu> wrote: > > We are pleased to announce an initial version of the CORD-19-on-FHIR >>dataset for COVID-19 research, a dataset of 13202 journal articles >>relevant to novel coronavirus research. This dataset extends the >>CORD-19 dataset (on which it is based) by adding several semantic >>annotations. It is represented in FHIR RDF to facilitate semantic >>linkage with other biomedical datasets. >> >>CORD-19-on-FHIR dataset currently adds the following semantic >>annotations: >> >>- Conditions: 103,968 instances >>- Medications: 16,406 instances >>- Procedures: 54,720 instances >> >>CORD-19-on-FHIR is available on github, and collaboration is invited: >>https://github.com/fhircat/CORD-19-on-FHIR >> >>It is licensed to encourage open COVID-19 research. See specific terms: >>https://github.com/fhircat/CORD-19-on-FHIR/blob/master/LICENSE >> >>CORD-19-on-FHIR was funded by the FHIRCat research grant, which seeks to >>enable the semantics of FHIR and terminologies for clinical and >>translational research: >>https://github.com/fhircat/FHIRCat >> >>Sincerely, > >>Guoqian Jiang (Mayo Clinic), Harold Solbrig (Johns Hopkins University), >>and FHIRCat team >
Received on Thursday, 26 March 2020 22:41:14 UTC