- From: Michael Miller <Michael.Miller@systemsbiology.org>
- Date: Mon, 27 Jun 2016 12:04:33 -0700
- To: David Booth <david@dbooth.org>, Renato Iannella <r@iannel.la>
- Cc: "its@lists.hl7.org" <its@lists.hl7.org>, w3c semweb HCLS <public-semweb-lifesci@w3.org>
hi david and renalto, it's been an interesting, and good, discussion. > Some common reasons why health data is legitimately published: i just wanted to add one more reason that has occurred often for me, and that is with-in an organization health data can be exchanged, and, more importantly, with-in a collaboration, health data can be published privately. cheers, michael > -----Original Message----- > From: David Booth [mailto:david@dbooth.org] > Sent: Monday, June 27, 2016 11:43 AM > To: Renato Iannella > Cc: its@lists.hl7.org; w3c semweb HCLS > Subject: Re: FHIR on schema.org > > Renato requested through private email that I respond to this message on > these lists, so . . . > > On 06/02/2016 11:52 PM, Renato Iannella wrote: > > > >> On 2 Jun 2016, at 12:55, David Booth <david@dbooth.org> wrote: > >> > >> To my mind, the publication of a *vocabulary* is completely > >> different from the publication of data that is expressed using that > >> vocabulary. I am not understanding why you are concerned about the > >> publication of a *vocabulary*. What harm do you think would be > >> caused by the publication of a healthcare vocabulary on schema.org > >> that is fully aligned with a widely used healthcare standard? > > > > The understanding is clear if you understand the *purpose* and scope > > of Schema.Org (see https://schema.org/docs/faq.html#0) Vocabs are > > published there to create instance data for markup on public webpages > > (for search engines and others to use, if at all). The publication of > > a schema.org vocab is saying to the web community…here is how you > > publish data about this area on public web pages. (and typically, the > > community publishing the vocab does not have its own infrastructure > > and governance.) > > > > By HL7/W3C publishing the FHIR Ontology on Schema.Org we are saying > > that it is now possible to publish personal eHealth records on public > > web pages. For example, you can publish a FHIR Procedure resource > > with the (mandatory) subject/patient as part of the markup data on a > > webpage. > > Correct. Again: what harm do you think is caused by that? > > Giving people a vocabulary for publishing eHealth records is *not* the > same as publishing those records. It simply provides a consistent > *vocabulary* for publishing data *when* it is appropriate to do so. > > Teaching someone how to drive a car does not mean that we are > encouraging them to drive off of a cliff. > > > > > (Also, as an aside, the *FHIR Ontology* is *not* "a widely used > > healthcare standard”…yet :-) > > > >> The schema.org vocabulary already allows phone numbers to be > >> expressed: https://schema.org/telephone Phone number can be > >> intentionally or unintentionally made either be public or private, > >> just as healthcare data can. > > > > Yes, but what is the *purpose* of the telephone property Versus the > > *purpose* of the FHIR Procedure? Why would you publish a person's > > (FHIR) Procedure on a web page? > > The issue here is not the choice of information, since medical > procedures and phone numbers can already be published in plain English > prose, without the use of a controlled vocabulary. What's new is that > we are considering the use of particular controlled vocabulary -- FHIR > -- that is likely to be widely used in healthcare. The reason for using > this vocabulary is the exact same reason for publishing anything with a > controlled vocabulary: to accurately convey the information in machine > processable form. > > Some common reasons why health data is legitimately published: > > - It is test data. > > - It is de-identified data, for research. > > - The individual it's about wants to publish it. For example, he/she > may have a rare disease and wants others to help seek a cure for it. > > > > >> No, exactly the opposite. The point is to *not* make a new > >> vocabulary. > > > > But you are. The second you mint the schema.org/fhir/* URIs for the > > vocab terms…you just created *another* vocabulary (to maintain, > > govern, etc). > > The point is to make them synonyms -- not to define or maintain them > independently. > > There are pros and cons of creating alternate URIs in schema.org for > existing FHIR concepts. > > Some pros: > > - They become easy for users of schema.org, many of whom are unlikely > to know or use any other vocabulary. > > - They get a broader audience using the *same* concepts, which will > hopefully prevent that audience from creating new concepts with > inconsistent, overlapping meanings. > > Some cons: > > - They require two URIs to be recognized for a concept, instead of one. > > - They must be maintained, as synonyms, without diverging. (This > should probably be done through a semi-automated process.) > > > > >> The point is to make the vocabulary in schema.org exactly match the > >> vocabulary in FHIR -- not have schema.org use a different and > >> conflicting vocabulary of its own. The schema.org URIs would be > >> synonyms for FHIR URIs. > > > > My point is that you *do not* need to do that. We already have the > > HL7 FHIR URIs for the vocab. Use that. > > I will, thank you. But you are unlikely to get people who *only* use > the schema.org vocabulary to use the FHIR vocabulary. And there are > likely to be far more of them than FHIR users. > > > > >> Agreed, and it may not be the best choice. But to my mind there > >> can only be benefit in encouraging the used of *shared* concepts > >> rather than having each new vocabulary inventing its own concepts > >> that overlap and conflict with existing concepts that are already > >> defined in other standards. > > > > We both agree then, schema.org is not a vocab mapping tool/service. > > > >> Broadly, semantic interoperability: enabling the exchange of data > >> with shared meaning. > > > > Sure, that’s a goal. But what is/are the use case(s)? > > Quoting from the wikipedia entry on Semantic Interoperability: > https://en.wikipedia.org/wiki/Semantic_interoperability > [[ > Importance > > The practical significance of semantic interoperability has been > measured by several studies that estimate the cost (in lost efficiency) > due to lack of semantic interoperability. One study,[4] focusing on the > lost efficiency in the communication of healthcare information, > estimated that US$77.8 billion per year could be saved by implementing > an effective interoperability standard in that area. Other studies, of > the construction industry[5] and of the automobile manufacturing supply > chain,[6] estimate costs of over US$10 billion per year due to lack of > semantic interoperability in those industries. In total these numbers > can be extrapolated to indicate that well over US$100 billion per year > is lost because of the lack of a widely used semantic interoperability > standard in the US alone. > ]] > > Above I mentioned three common reasons for publishing healthdata (test > data, de-identified data for research, individuals who wish to publish > their own data). I think it is also important to look in the aggregate > a the problem of achieving semantic interoperability. As explained here > http://yosemiteproject.org/2015/webinars/standardize/ > one of the key things needed in the long run is semantic convergence of > concepts across vocabularies, i.e., to converge on a common set of > concepts that are used by all healthcare vocabularies. > > > > >> But alignment with existing standards whenever possible is still > >> beneficial. > > > > Which exisiting standards do you want the FHIR Ontology to align to? > > > > To summarise, if the purpose is to map the FHIR Ontology to other > > related concepts in exisiting ontologies, then we can do that either > > in the FHIR Ontology (or the others can refer to the FHIR ontology > > URIs)…or we can create a new SKOS ontology that maps between them > > (and hosted/governed by HL7). > > No, I don't think that is the purpose in this case. The purpose is to > align *other* vocabularies with the FHIR vocabulary, in this case the > schema.org vocabulary. > > I hope that helps, and I hope you will be able to join tomorrow's call > to discuss views, possibilities, pros and cons. > > Thanks, > David Booth > > > > > > Cheers - Renato > > > >
Received on Monday, 27 June 2016 19:05:21 UTC