- From: Michel Dumontier <michel.dumontier@gmail.com>
- Date: Wed, 26 Mar 2014 11:08:21 -0700
- To: wikipathways-discuss@googlegroups.com, bio2rdf <bio2rdf@googlegroups.com>, w3c semweb hcls <public-semweb-lifesci@w3.org>, sadi-discuss@googlegroups.com, "sio-ontology@googlegroups.com" <sio-ontology@googlegroups.com>
- Message-ID: <CALcEXf7xAoP6SEBSE8XStmbhf+fSMVkSLNnyOMEhQ5VkdgPxNQ@mail.gmail.com>
*What*: 1st Network of BioThings Hackathon (#networkbiothings<https://twitter.com/search?q=%23networkbiothings&f=realtime> ) *When*: April 26-27, 2014 *Where*: This hackathon will be held concurrently at *two* sites (more info below): - Stanford University - Maastricht University *Why*: Despite the massive amount of biomedical literature, only a small amount is available in a form that is readily computable. The National Center for Biomedical Ontology (NCBO) is hosting the first hackathon to develop a comprehensive Network of BioThings (proteins, genes, pathways, mutations, drugs, diseases) extracted from scientific research articles and integrated with public biomedical data (see blog post http://goo.gl/i91ngK). During this hackathon, we will (1) identify motivating use cases, (2) define a shared, sustainable, multi-component infrastructure to build the NoB, and (3) implement common data representations, ontology-based programmatic interfaces, and develop cool applications. We will do this in an open, scalable, responsive manner so that it becomes a major asset for hackers and biomedical researchers worldwide. This Hackathon will feature - networking and mentoring with leading researchers and experts - tutorials on text mining, terminology services, indexing and querying structured data. - prizes for most significant contributions in a number of key areas - $500 for best motivating use case - $500 for most sustainable infrastructure design - 2x$500 for best applications *Who*: We're looking for: - Hackers and Mentors - Biologists, Text Miners and Data Wranglers - Ontologists, Terminologists, and Data Linkers - Semantic Web novices and experts - Systems and Network Biologists - Crowdsourcing experts and functional game designers - Skills in Large Text/Data Indexing, Facet Search and Browse, and REST APIs - Domain experts to advise on motivating use cases Come join us for 2 days of networking, designing, and coding culminating in prize-winning pitches and demos! <https://github.com/Network-of-BioThings/nob-hq/wiki/1st-Network-of-BioThings-Hackathon#the-stanford-site>The Stanford Site *Location*: Li Ka Shing Center, Stanford University, Stanford, California *Registration*: $50 per participant - register here<http://app.certain.com/profile/form/index.cfm?PKformID=0x17573118de1&> - Max 60 participants - first come first served! <https://github.com/Network-of-BioThings/nob-hq/wiki/1st-Network-of-BioThings-Hackathon#schedule> Schedule *Saturday April 26* 8:30AM: Registration and Breakfast 9:00AM: Introductions, Problem Statement, Ideas session 10:15AM: Project Pitches and Team Formation 11:00AM: Tutorials 12:15PM: Lunch is served 6:00PM: Progress Reports 7:30PM: Dinner in Palo Alto *Sunday April 27* 8:00AM : Breakfast is served 12:15PM: Lunch is served 4:30PM : Pitches and Demos 6:00PM : Winners announced, prizes awarded, final remarks. *Sponsor* NCBO The National Center for Biomedical Ontology (NCBO) is an NIH funded center to support biomedical research through tools and resources for ontology-based analyses. The NCBO is home to BioPortal, a repository of over 350 biomedical ontologies, and provides services to annotate text with ontology terms, and ontology-based data exploration. For more information, see the website athttp://www.bioontology.org <https://github.com/Network-of-BioThings/nob-hq/wiki/1st-Network-of-BioThings-Hackathon#the-maastricht-university-site>The Maastricht University site *Web site*: http://projects.bigcat.unimaas.nl/hackaton-biothings/ *Location*: Maastricht University, building UNS50<http://www.maastrichtuniversity.nl/web/Main/Sitewide/Content/HowToGetToUNS50FHML.htm>, Netherlands *Registration*: http://projects.bigcat.unimaas.nl/hackaton-biothings/register/ <https://github.com/Network-of-BioThings/nob-hq/wiki/1st-Network-of-BioThings-Hackathon#schedule-1> Schedule *Saturday, April 26* 12:00: Registration and Brunch 12:30: Introductions, Problem Statement, Ideas session 13:15: Project Pitches and Team Formation 14:00: Tutorials 18:00: Progress Reports (broadcasting to US site) 19:00: Pizza *Sunday, April 27* 11:00: Watch video progress results of the S. Francisco Team and Brunch 16:30: Pitches and Demos Michel Dumontier Associate Professor of Medicine (Biomedical Informatics), Stanford University Chair, W3C Semantic Web for Health Care and the Life Sciences Interest Group http://dumontierlab.com
Received on Wednesday, 26 March 2014 18:12:55 UTC