Call for Participation: Phenotype Day at ISMB

[Apologies for cross-posting]

*** CALL FOR PARTICIPATION ***

PHENOTYPE DAY AT ISMB 2014 - A JOINT INITIATIVE WITH BIO-ONTOLOGIES and 
BIOLINK SIGS

Boston, USA

12th July 2014

http://phenoday2014.bio-lark.org/

Registration with Bio-Ontologies SIG is open now at: 
http://www.iscb.org/ismb2014-registration

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- Invited speakers: Prof. Dr. Peter Robinson (Charite Berlin) and Dr. 
Dietrich Rebholz-Schuhmann (University of Zurich)
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*** PROGRAM ***

8:30 8:40 Introduction and welcome

8:40 9:00 Xiao Fu, Riza Theresa Batista-Navarro, Rafal Rak and Sophia 
Ananiadou: A Strategy for Annotating Clinical Records with Phenotypic 
Information relating to the Chronic Obstructive Pulmonary Disease.

9:00 9:20 Apurv Patki, Abeed Sarker, Pranoti Pimpalkhute, Azadeh 
Nikfarjam, Rachel Ginn, Karen O'Connor, Karen Smith and Graciela 
Gonzalez: Mining Adverse Drug Reaction Signals from Social Media: Going 
Beyond Extraction.

9:20 9:40 Nigel Collier, Anika Oellrich and Tudor Groza: Concept 
selection for phenotypes and disease-related annotations using support 
vector machines.

9:40 10:00 Simon Jupp, James Malone, Tony Burdett, Jean-Karim Heriche, 
Jan Ellenberg, Helen Parkinson and Gabriella Rustici
: Data driven development of a Cellular Microscopy Phenotype Ontology.

10:00 10:45 Coffee Break

10:45 11:30 Rainer Winnenburg and Olivier Bodenreider: Coverage of 
Phenotypes in Standard Terminologies.


10:55 11:05 Nicole Washington, Melissa Haendel, Sebastian Kohler, 
Suzanna Lewis, Peter Robinson, Damian Smedley and Christopher Mungall: 
How good is your phenotyping? Methods for quality assessment.

11:05 11:15 Cynthia Smith and Janan Eppig: Expanding the Mammalian 
Phenotype Ontology to support high throughput mouse phenotyping data 
from large-scale mouse knockout screens.

11:15 12:15 Invited talk: Peter Robinson – The Human Phenotype Ontology: 
Algorithms and Applications

12:15 2:00 Lunch

2:00 2:20 Mary Regina Boland, Nicholas P Tatonetti and George Hripcsak: 
CAESAR: a Classification Approach for Extracting Severity Automatically 
from Electronic Health Records.

2:20 2:30 Drashtti Vasant, James Malone, Helen Parkinson, Simon Jupp, 
Laetitia Chanas, Ana Rath, Marc Hanauer, Annie Olry and Peter Robinson: 
ORDO: An Ontology Connecting Rare Disease, Epidemiology and Genetic Data.

2:30 2:40 Charles Borromeo, Jeremy Espino, Nicole Washington, Maryann 
Martone, Christopher Mungall, Melissa Haendel and Harry Hochheiser: 
Toward interactive visual tools for comparing phenotype profiles.

2:40 2:50 James Balhoff, Thomas Alexander Dececchi, Paula Mabee and 
Hilmar Lapp: Presence-absence reasoning for evolutionary phenotypes.

2:50 2:55 Irene Papatheodorou, Anika Oellrich and Damian Smedley: 
Linking gene expression to phenotypes via pathway information.

2:55 3:00 Poster lightning talks

3:00 4:00 Coffee Break + Posters

Ivo Georgiev: Aggregating the world's rare disease phenotypes: A case study
Kenneth McLeod: PhenoImageShare:tools for sharing phenotyping images
Nicole Washington: Investigating the relationship between standard 
laboratory mouse strains and their mutant phenotypes.
Liqin Wang: Can we acquire a complete heart-failure vocabulary from 
heterogeneous textual sources for building reference disease ontology?

4:00 5:00 Invited talk: Dietrich Rebholz-Schuhmann – Semantic 
normalisation of phenotypes for biomedical data integration: 
requirements, status and caveats.

5:00 5:10 Nigam Shah: BioOntologies overview

5:10 5:55 Whitepaper Working groups

5:55 6:00 Closing remarks


--
Nigel Collier (EMBL-EBI and NII)
Anika Oellrich (Wellcome Trust Sanger Institute)
Tudor Groza (University of Queensland)
Karin Verspoor (University of Melbourne)
Nigam Shah (Stanford University)

Received on Friday, 13 June 2014 11:44:35 UTC