Re: biontology.org Linked Data URIs?

The OBO library subset of bio-ontologies have URIs that conform to linked data norms.

E.g.

http://purl.obolibrary.org/obo/GO_0006264 - mitochondrial DNA replication
http://purl.obolibrary.org/obo/CL_0000617 - GABAergic neuron
http://purl.obolibrary.org/obo/MP_0002766 - situs inversus
http://purl.obolibrary.org/obo/OBI_1110116 - splenocyte


On May 28, 2013, at 2:10 PM, Jim McCusker wrote:

> All worthy goals, I have an account myself. But they can track usage through conventional web server logs (including IP address usage) and can restrict annoying bots (as opposed to the non-annoying ones, which they would like to encourage, I would think) by rate-limiting page access.
> 
> Jim
> 
> 
> On Tue, May 28, 2013 at 5:04 PM, Richard Boyce <rdb20@pitt.edu> wrote:
> I think this helps bioportal keep track of usage (to justify its existence) and reduce annoying bots. Also, I get updates from bioportal for having registered an account. -R
> 
> 
> On 05/28/2013 04:54 PM, Jim McCusker wrote:
>> I can see asking for an API key for working with computational resources (like Annotator and Ontology Recommender), but we don't need an API key to see those classes in HTML, why should we need one to see them in RDF?
>> 
>> Jim
>> 
>> 
>> On Tue, May 28, 2013 at 4:07 PM, Peter Ansell <ansell.peter@gmail.com> wrote:
>> Hi Kingsley,
>> 
>> I think you may need an API key to work with them? [1]
>> 
>> Cheers,
>> 
>> Peter
>> 
>> [1] http://www.bioontology.org/wiki/index.php/NCBO_REST_services
>> 
>> 
>> On 29 May 2013 05:55, Kingsley Idehen <kidehen@openlinksw.com> wrote:
>> All,
>> 
>> Who are the folks responsible for URIs such as:
>> 
>> 1. <http://purl.bioontology.org/ontology/NCIM/C0144157> ?
>> 2. <http://purl.bioontology.org/ontology/MSH/C010843> ?
>> 
>> I ask due to the following curl output:
>> 
>> HTTP/1.1 302 Moved Temporarily
>> Date: Tue, 28 May 2013 19:46:48 GMT
>> Server: 1060 NetKernel v3.3 - Powered by Jetty
>> Location: http://bioportal.bioontology.org/virtual/1499/C0144157
>> Content-Type: text/html; charset=iso-8859-1
>> X-Purl: 2.0; http://localhost:8080
>> Expires: Thu, 01 Jan 1970 00:00:00 GMT
>> Content-Length: 287
>> Connection: close
>> 
>> HTTP/1.1 404
>> Date: Tue, 28 May 2013 19:46:48 GMT
>> Server: Apache/2.2.15 (Red Hat)
>> X-Powered-By: Phusion Passenger (mod_rails/mod_rack) 3.0.18
>> Cache-Control: no-cache
>> Set-Cookie: _bp_session=61cc2ee75b3abf041d7df4ada339ce68; domain=.bioontology.org; path=/; HttpOnly
>> Content-Length: 6468
>> Status: 404
>> Connection: close
>> Content-Type: */*; charset=utf-8
>> 
>> And:
>> 
>> curl -ILH "Accept: text/turtle" http://purl.bioontology.org/ontology/MSH/C010843
>> HTTP/1.1 302 Moved Temporarily
>> Date: Tue, 28 May 2013 19:54:21 GMT
>> Server: 1060 NetKernel v3.3 - Powered by Jetty
>> Location: http://bioportal.bioontology.org/virtual/1351/C010843
>> Content-Type: text/html; charset=iso-8859-1
>> X-Purl: 2.0; http://localhost:8080
>> Expires: Thu, 01 Jan 1970 00:00:00 GMT
>> Content-Length: 286
>> Connection: close
>> 
>> HTTP/1.1 302
>> Date: Tue, 28 May 2013 19:54:21 GMT
>> Server: Apache/2.2.15 (Red Hat)
>> X-Powered-By: Phusion Passenger (mod_rails/mod_rack) 3.0.18
>> Cache-Control: no-cache
>> X-Runtime: 12
>> Set-Cookie: _bp_session=9889b1bed12d58172331ce1bbf42d516; domain=.bioontology.org; path=/; HttpOnly
>> Location: http://bioportal.bioontology.org/visualize/46836/?conceptid=C010843
>> Content-Length: 133
>> Status: 302
>> Vary: Accept-Encoding
>> Connection: close
>> Content-Type: text/html; charset=utf-8
>> 
>> HTTP/1.1 301
>> Date: Tue, 28 May 2013 19:54:21 GMT
>> Server: Apache/2.2.15 (Red Hat)
>> X-Powered-By: Phusion Passenger (mod_rails/mod_rack) 3.0.18
>> Cache-Control: no-cache
>> X-Runtime: 17
>> Set-Cookie: _bp_session=17e1fddfad5145ef1b6217dc6a76570c; domain=.bioontology.org; path=/; HttpOnly
>> Location: http://bioportal.bioontology.org/ontologies/46836?p=terms&conceptid=C010843
>> Content-Length: 145
>> Status: 301
>> Vary: Accept-Encoding
>> Connection: close
>> Content-Type: text/html; charset=utf-8
>> 
>> HTTP/1.1 200
>> Date: Tue, 28 May 2013 19:54:21 GMT
>> Server: Apache/2.2.15 (Red Hat)
>> X-Powered-By: Phusion Passenger (mod_rails/mod_rack) 3.0.18
>> X-Runtime: 149
>> ETag: "2d0e7a20547ae7fa0b9fd221222016e6"
>> Cache-Control: private, max-age=0, must-revalidate
>> Set-Cookie: _bp_session=0770e84c6238dfdcc24bb8e0f65a8faf; domain=.bioontology.org; path=/; HttpOnly
>> Content-Length: 93664
>> Status: 200
>> Vary: Accept-Encoding
>> Connection: close
>> Content-Type: text/html; charset=utf-8
>> 
>> 
>> 
>> -- 
>> 
>> Regards,
>> 
>> Kingsley Idehen 
>> Founder & CEO
>> OpenLink Software
>> Company Web: http://www.openlinksw.com
>> Personal Weblog: http://www.openlinksw.com/blog/~kidehen
>> Twitter/Identi.ca handle: @kidehen
>> Google+ Profile: https://plus.google.com/112399767740508618350/about
>> LinkedIn Profile: http://www.linkedin.com/in/kidehen
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> -- 
>> Jim McCusker
>> Programmer Analyst
>> Krauthammer Lab, Pathology Informatics
>> Yale School of Medicine
>> james.mccusker@yale.edu | (203) 785-4436
>> http://krauthammerlab.med.yale.edu
>> 
>> PhD Student
>> Tetherless World Constellation
>> Rensselaer Polytechnic Institute
>> mccusj@cs.rpi.edu
>> http://tw.rpi.edu
> 
> 
> -- 
> Richard D Boyce, PhD
> Assistant Professor of Biomedical Informatics
> Faculty, Geriatric Pharmaceutical Outcomes and Gero-Informatics Research and Training Program
> Scholar, Comparative Effectiveness Research Program
> University of Pittsburgh
> rdb20@pitt.edu
> Office: 412-648-9219
> Twitter: @bhaapgh
> 
> 
> 
> -- 
> Jim McCusker
> Programmer Analyst
> Krauthammer Lab, Pathology Informatics
> Yale School of Medicine
> james.mccusker@yale.edu | (203) 785-4436
> http://krauthammerlab.med.yale.edu
> 
> PhD Student
> Tetherless World Constellation
> Rensselaer Polytechnic Institute
> mccusj@cs.rpi.edu
> http://tw.rpi.edu