- From: Phillip Lord <phillip.lord@newcastle.ac.uk>
- Date: Tue, 23 Jul 2013 12:24:03 +0100
- To: Melissa Haendel <haendel@ohsu.edu>
- Cc: Suzanna Lewis <suzi@berkeleybop.org>, Oliver Ruebenacker <curoli@gmail.com>, Karen Eilbeck <keilbeck@genetics.utah.edu>, SO developers <song-devel@lists.sourceforge.net>, public-semweb-lifesci <public-semweb-lifesci@w3.org>, "jennifer.warrender\@newcastle.ac.uk" <jennifer.warrender@newcastle.ac.uk>, "monarchinitiative-dev\@monarchinitiative.org" <monarchinitiative-dev@monarchinitiative.org>
To the extent that it helps to answer our use case, co-ordination might be useful; our work on the karyotype is reasonably tightly scoped, and I wish to maintain this. Phil Melissa Haendel <haendel@ohsu.edu> writes: > Hi all, It would be great if we could coordinate these efforts - The > genotype work we are doing that Chris Baker mentioned earlier on this > thread (see > http://www.unbsj.ca/sase/csas/data/ws/icbo2013/papers/ec/icbo2013_submission_60.pdf > ) > is already being integrated into the sequence ontology. > > Cheers, > Melissa > > On Jul 22, 2013, at 10:22 AM, Suzanna Lewis <suzi@berkeleybop.org<mailto:suzi@berkeleybop.org>> wrote: > > Check out the Sequence Ontology. It is well-established in the genomics community. > http://sequenceontology.org/ > > On Jul 22, 2013, at 4:53 PM, Phillip Lord <phillip.lord@newcastle.ac.uk<mailto:phillip.lord@newcastle.ac.uk>> wrote: > > > We are working on a karyotype ontology which describes chromosome abnormalities. > > The first paper is available here which also includes links to the ontology. > > http://arxiv.org/abs/1305.3758 > > > > > Oliver Ruebenacker <curoli@gmail.com<mailto:curoli@gmail.com>> writes: > > Hello, > > Does any one know of an ontology for somatic mutations (including SNPs, > chromosomal abnormalities, etc.)? > > Take care > Oliver > > -- > Phillip Lord, Phone: +44 (0) 191 222 7827 > Lecturer in Bioinformatics, Email: phillip.lord@newcastle.ac.uk<mailto:phillip.lord@newcastle.ac.uk> > School of Computing Science, http://homepages.cs.ncl.ac.uk/phillip.lord > Room 914 Claremont Tower, skype: russet_apples > Newcastle University, twitter: phillord > NE1 7RU > > > > Dr. Melissa Haendel > > Assistant Professor > Ontology Development Group, OHSU Library > http://www.ohsu.edu/library/ > Department of Medical Informatics and Epidemiology > Oregon Health & Science University > haendel@ohsu.edu<mailto:haendel@ohsu.edu> > skype: melissa.haendel > 503-407-5970 > > > -- Phillip Lord, Phone: +44 (0) 191 222 7827 Lecturer in Bioinformatics, Email: phillip.lord@newcastle.ac.uk School of Computing Science, http://homepages.cs.ncl.ac.uk/phillip.lord Room 914 Claremont Tower, skype: russet_apples Newcastle University, twitter: phillord NE1 7RU
Received on Tuesday, 23 July 2013 11:24:31 UTC