Re: [Linked Life Data : BioRDF / LODD] Minutes

> I tried to have a look at the minutes, but the URL seems broken for me ;p

Not sure what happened there. It's the link that RRSAgent returned.
Pasting from my log below:

 https://docs.google.com/document/d/1VrBWM133Pxxqe5jbjgg2IPiwv5JaHo98DDJdqOT1yh0/edit

<mscottm2> Scott: BioRDF has worked in a number areas: 1) knowledge
base 2) query federation 3) expression data 4) Neurodegenerative
disease 5) customized SPARQL views with SWObjects mapping between
vocabularies
<mscottm2> LODD has created linked data for a number of important HCLS
data sources.
<mscottm2> Scott: Combine BioRDF and LODD? Let's discuss possible new
directions and see if any projects appeal to both BioRDF and LODD, or
if there are clearly diverging interests.
<mscottm2> ..* Tools and approaches to create clean LODD for use in CDS
<mscottm2>   - Standard mappings to ontologies
<mscottm2>   - Data set description - refresh rate, license type
<Zakim> +??P24
<mscottm2> Michel: Would like to create interface that makes it
possible to merge different sources into a view.
<oliver> zakim, +??P24 is oliver
<Zakim> sorry, oliver, I do not recognize a party named '+??P24'
<oliver> zakim, ??P24 is Oliver
<Zakim> +Oliver; got it
<oliver> zakim, ??P24 is oliver
<Zakim> I already had ??P24 as Oliver, oliver
<egonw> :)
<oliver> zakim, who's here?
<Zakim> On the phone I see Erich, Scott_Marshall, +1.631.444.aaaa,
Michel, +1.206.732.aabb, egonw, Oliver
<Zakim> On IRC I see michael, janos, michel, RRSAgent, Zakim,
mscottm2, achille_zappa, oliver, egombocz, egonw, MacTed, ericP
<oliver> zakim, Oliver is oliver
<Zakim> +oliver; got it
<oliver> zakim, mute me
<Zakim> oliver should now be muted
<oliver> zakim, who's making noise?
<Zakim> oliver, listening for 11 seconds I heard sound from the
following: Scott_Marshall (87%)
<michel> http://www.chemspider.com/Chemical-Structure.2157.html?rid=bc58a529-3e19-4561-892b-026466c53730
<mscottm2> Scott: Semantic wiki and SPARQL query editor that uses
autocompletion from indexes of federated query endpoints and named
graphs.
<egonw> have people here seen distilbio ?
<egonw> http://www.distilbio.com/
<egonw> good
<egonw> what's the CTO name?
<mscottm2> Michel: Interface doesn't have to be polished but just show
that we can build an app that makes use of federation of linked data.
<michel> http://bnowack.de/work#1
<mscottm2> Scott: <describes dynamically-generated facetted browser>
<mscottm2> Michel: There is a facetted browser for Linked Data from
Ben Nowack, but it was commercial last year.
<egonw> https://synapse.sagebase.org/Portal.html#
<michel> paggr prospect
<michel> sparql javascript:
http://www.thefigtrees.net/lee/blog/2006/04/sparql_calendar_demo_a_sparql.html
<egonw> note: I'm talking to Mike on a telcon tonight... and since
we're doing more and more semweb, I doubt we'll not discuss RDF...
<egonw> if it comes up, I can discuss SPARQL versus API ...
<michael> * translating TCGA data into RDF (the kicker being the
sample characteristics are in a different set of files than the
MAGE-TAB)  * demonstrating the usefulness in generating novel
discoveries using the RDF representation of gene expression and next
gen experiments  * what does it mean to run an analysis in an RDF
framework to generate new triples? (i.e. runn
<egonw> I'm sorry to have to leave...
<egonw> an augmented science database reality using RDF sounds cool
<egonw> ttl
<Zakim> -egonw
* egonw has quit IRC (Ping timeout)
* michael has left #hcls
<Zakim> - +1.631.444.aaaa
<Zakim> - +1.206.732.aabb
<Zakim> -Erich
* egombocz has quit IRC (Quit: http://www.mibbit.com ajax IRC Client)
<Zakim> -oliver
* janos has quit IRC (Quit: http://www.mibbit.com ajax IRC Client)
* oliver has quit IRC (Quit: http://www.mibbit.com ajax IRC Client)
<Zakim> -Scott_Marshall
<Zakim> SW_HCLS(BioRDF)11:00AM has ended
<Zakim> Attendees were Erich, Scott_Marshall, +1.631.444.aaaa, Michel,
+1.206.732.aabb, egonw, oliver
<mscottm2> kalpana krishnaswami is the CTO of Metaome (Distilbio) and
HCLS member.
<mscottm2>   RRSAgent, please draft minutes
<RRSAgent> I have made the request to generate
http://www.w3.org/2012/05/07-HCLS-minutes.html mscottm2
<mscottm2>   RRSAgent, please make log world-visible
<RRSAgent> I have made the request, mscottm2
* Zakim excuses himself; his presence no longer seems to be needed
* Zakim has left #HCLS

> On 08/05/12 14:30, M. Scott Marshall wrote:
>>
>> Here are the minutes from yesterday's discussion about potential
>> activities for the group(s).
>> http://www.w3.org/2012/05/07-HCLS-minutes.html
>>
>> We discussed a number of possibilities, including:
>>
>> * suggesting ways to tighten integration across LODD data (such as URI
>> suggestions for commonly used data references, i.e. drugbank)
>> * working on standards for data set description and federating data
>> (also building on biohackathon work)
>> * building interface and tools for creating and making use of federated
>> data
>> * SPARQL access to important datasets such as Sage Bionetworks data /
>> Synapse API, TCGA, UCSC Genome Browser.
>> * and more.
>>
>> Cheers,
>> Scott
>>
>
>
> --
> --------------------------------------------------------
> Nick Juty
> Database Curator
> European Bioinformatics Institute
> Cambridge, United Kingdom
> --------------------------------------------------------
>



-- 
M. Scott Marshall, PhD
https://plus.google.com/u/0/114642613065018821852/posts
http://www.linkedin.com/pub/m-scott-marshall/5/464/a22

Received on Tuesday, 8 May 2012 13:52:38 UTC