Hello Sarala, This is great - naive question: is there a reason why you didn't go with the biopax representation? Best, Lena On Mon, Jun 25, 2012 at 10:46 AM, <sarala@ebi.ac.uk> wrote: > Hi Lena, > > I'm working on semantic interoperability of data and models. As part of > this work, I have converted all curated sbml models in biomodels into RDF. > It would be good to see what you have done, may be see were we can > collaborate. I'm in the process of documenting my work but you can find > the rdf models and the schema at > https://sites.google.com/site/ricordowp4/file-cabinet/sbmltordf. These > models are stored in a RDF store and can be queried via ws eg. > http://wwwdev.ebi.ac.uk/ricordo-rdfstore-ws/service/search/getResources. A > bit more documentation on this can be found at > https://github.com/sarala/ricordo-rdfstore-ws. I will be uploading the > converter code to github soon. Please let me know if your work is > available to access online. > > Cheers, > Sarala > > > Mike, > > This might be of interest to harmony/combine folks - which mailing > lists > > might Lena post to do indicate she will be presenting on this topic? > > > > m. > > > > On Fri, Jun 22, 2012 at 12:09 PM, Me <helenadeus@gmail.com> wrote: > > > >> Hi Michael, > >> > >> My plan for the next telco is to have a much MUCH more hands-on focus > >> than what we've had so far. Me and Laleh (my PhD student) are creating > >> RDF > >> representations of SBML models so that we can visualize with google > >> fusion > >> tables. We hope to have something to show by next telco. > >> > >> Best, > >> Lena > >> > >> > > -- > > Michel Dumontier > > Associate Professor of Bioinformatics, Carleton University > > Chair, W3C Semantic Web for Health Care and the Life Sciences Interest > > Group > > http://dumontierlab.com > > > > -- Helena F. Deus Post-Doctoral Researcher at DERI/NUIG http://lenadeus.info/
Received on Monday, 25 June 2012 16:31:30 UTC