- From: Jim McCusker <james.mccusker@yale.edu>
- Date: Thu, 26 Apr 2012 15:29:12 -0400
- To: Mark <markw@illuminae.com>
- Cc: "M. Scott Marshall" <mscottmarshall@gmail.com>, HCLS <public-semweb-lifesci@w3.org>
No problem, this was something that was added after the telecon, and I hadn't mentioned it to anyone outside of my immediate collaborators. Jim On Thu, Apr 26, 2012 at 3:22 PM, Mark <markw@illuminae.com> wrote: > (apologies for not looking it up myself - I'm still stuck without internet > access at home, and my cell provider in Spain cut me off from high-speed > cell access too, due to over-use... So I'm basically dial-up speed on my > phone... And this little seen isn't great for exploring ontologies!) > > > > > Jim McCusker <james.mccusker@yale.edu> wrote: >> >> Actually, we've switched over to generating subproperties of >> sio:has_predicate, so I'm glad you suggested the same thing. >> >> Jim >> >> On Thu, Apr 26, 2012 at 2:07 PM, Mark <markw@illuminae.com> wrote: >> > Hmmmm... what's the range of that predicate? It's a bit like the SIO >> > "has >> > attribute", where you need to be sure to explicitly type what's at the >> > other >> > end to do "useful" reasoning. We're just concluding a project where we >> > use >> > species-of-origin to restrict the choices the SHARE query resolver can >> > make >> > when it queries the SADI registry. (the query requires the discovery of >> > a >> > BLAST service, and it will chose the right one based on the species that >> > the >> > sequence is derived from...) >> > >> > Similar problem? if so, let me know and I'll post the model we came-up >> > with >> > a few weeks ago... Maybe we can converge on a common solution? >> > >> > Cheers all! >> > >> > M >> > >> > >> > >> > "M. Scott Marshall" <mscottmarshall@gmail.com> wrote: >> >> >> >> We had an interesting discussion with Jim McCusker about Linked Data / >> >> RDF representations of MAGE-TAB and some issues, such as choices of >> >> predicates to make describe a human sample. >> >> >> >> how to encode "is a sample originating from human" >> >> closest now is "has characteristic" >> >> >> >> Jim showed us some linked data versions of MAGE-TAB containing >> >> descriptions and data of studies. Very nice! >> >> >> >> The minutes are here: >> >> http://www.w3.org/2012/04/23-HCLS-minutes.html >> >> >> >> Cheers, >> >> Scott >> >> >> > >> >> >> >> -- >> Jim McCusker >> Programmer Analyst >> Krauthammer Lab, Pathology Informatics >> Yale School of Medicine >> james.mccusker@yale.edu | (203) 785-6330 >> http://krauthammerlab.med.yale.edu >> >> PhD Student >> Tetherless World Constellation >> Rensselaer Polytechnic Institute >> mccusj@cs.rpi.edu >> http://tw.rpi.edu >> > -- Jim McCusker Programmer Analyst Krauthammer Lab, Pathology Informatics Yale School of Medicine james.mccusker@yale.edu | (203) 785-6330 http://krauthammerlab.med.yale.edu PhD Student Tetherless World Constellation Rensselaer Polytechnic Institute mccusj@cs.rpi.edu http://tw.rpi.edu
Received on Thursday, 26 April 2012 19:30:01 UTC