Re: reasoning on gene ontology

Hi,

You may be interested in the system and examples online at the site below.

In particular:

www.reengineeringllc.com/demo_agents/GeneSequenceOntology3.agent

Apologies if you have seen this before, and thanks for comments.

                                                    -- Adrian

Internet Business Logic
A Wiki and SOA Endpoint for Executable Open Vocabulary English Q/A over SQL
and RDF
Online at www.reengineeringllc.com
Shared use is free, and there are no advertisements

Adrian Walker
Reengineering
Phone: USA 860 830 2085

On Thu, Apr 5, 2012 at 4:10 PM, bin chen <binchen@indiana.edu> wrote:

> Hi,
>
> Does anyone perform some reasoning using gene ontology? Any intereting
> story to share? I recently ran reasoning based on extended GO relations
> [1], and found that the triples doubled after reasoning. I was also aware
> of some queries are not able to be performed in relational database. but I
> havenot found very interesing cases to utlize the inferred results. Any
> reference? Thanks.
>
> Best, Bin
> [1]  http://www.geneontology.org/GO.ontology-ext.relations.shtml
>
> --
> Bin Chen
> PHD student, Informatics,
> Indiana University at Bloomington
> http://cheminfo.informatics.indiana.edu/~binchen
>