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Re: FW: A Fresh Look Proposal (HL7)

From: Jim McCusker <james.mccusker@yale.edu>
Date: Mon, 19 Sep 2011 16:33:28 -0400
Message-ID: <CAAtgn=RiF0x5WC2iLw9NAfTuBpaVxkh3mD2CsXzS2CdpCVj5tg@mail.gmail.com>
To: "Hau, Dave (NIH/NCI) [E]" <haudt@mail.nih.gov>
Cc: "public-semweb-lifesci@w3.org" <public-semweb-lifesci@w3.org>
Additionally, there's a Linked Science workshop coming up at ISWC this year:

http://data.linkedscience.org/events/lisc2011

On Mon, Sep 19, 2011 at 3:01 PM, Hau, Dave (NIH/NCI) [E] <haudt@mail.nih.gov
> wrote:

> FYI, there are two upcoming W3C workshops that may be relevant to this
> discussion, on how to use RDF/OWL for application integration:****
>
> ** **
>
> http://www.w3.org/2011/09/LinkedData/****
>
> ** **
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> http://www.w3.org/2011/10/integration-workshop/****
>
> ** **
>
> (The first one would focus more on a semantic web approach than the second
> one.)****
>
> ** **
>
> - Dave****
>
> ** **
>
> ** **
>
> ** **
>
> ** **
>
> *From:* Hau, Dave (NIH/NCI) [E]
> *Sent:* Sunday, September 18, 2011 6:47 PM
> *To:* Kerstin Forsberg
>
> *Cc:* Jim McCusker; conor dowling; public-semweb-lifesci@w3.org
> *Subject:* RE: FW: A Fresh Look Proposal (HL7)****
>
> ** **
>
> Thanks Kerstin.  The DCM spreadsheet is informative for me.  There are
> several clinical model sources I had not known previously.****
>
> ** **
>
> I think the DCMs or archetypes could potentially be defined as graph
> patterns via SPARQL queries, involving concepts from standard domain
> ontologies.  These DCMs could be resources exposed by REST as documents in
> sections according to the hData record proposal.  In addition to that, the
> SPARQL endpoint could be a query resource in the REST service as well,
> supporting more granular queries or for other graph queries, under an access
> control mechanism.  The SPARQL query for a DCM would provide a level of
> semantic validation for a submitted RDF.  Further validation could be via
> the Pellet Integrity Constraint Validator (ICV) for example, involving
> reasoning on the data definition together with the value set as we discussed
> before.  Any other thoughts or comments are welcome!****
>
> ** **
>
> - Dave ****
>
> ** **
>
> ** **
>
> ** **
>
> *From:* Kerstin Forsberg [mailto:kerstin.l.forsberg@gmail.com]
> *Sent:* Sunday, September 18, 2011 6:21 AM
> *To:* Hau, Dave (NIH/NCI) [E]
> *Cc:* Jim McCusker; conor dowling; public-semweb-lifesci@w3.org
> *Subject:* Re: FW: A Fresh Look Proposal (HL7)****
>
> ** **
>
> 2011/9/18 Hau, Dave (NIH/NCI) [E] <haudt@mail.nih.gov>****
>
> Jim, I was thinking more about units of content as in a container storing
> properties from different classes, for a clinical purpose.  The classic
> example here is when an EHR needs to store or report a blood pressure
> measurement, what are the various data elements that need to be reported to
> provide enough context to interpret the reading.****
>
> ** **
>
> Here's a nice overview of Detailed Clinical Models****
>
>
> https://docs.google.com/document/d/11xGZs4drfwb7TY15Iwpk52UIxZcFhqMcMp1i3yV4To8/edit?hl=en_US&pli=1
>  ****
>
> ** **
>
> For the classical BP, and other Vitals Signs examples, it would be
> interrsting to see see a real example of clinical data using the BFO based
> Vital Signs Ontology****
>
> http://bio-ontologies.knowledgeblog.org/155 ****
>
> ** **
>
> Kerstin Forsberg****
>
> AstraZeneca  ****
>



-- 
Jim McCusker
Programmer Analyst
Krauthammer Lab, Pathology Informatics
Yale School of Medicine
james.mccusker@yale.edu | (203) 785-6330
http://krauthammerlab.med.yale.edu

PhD Student
Tetherless World Constellation
Rensselaer Polytechnic Institute
mccusj@cs.rpi.edu
http://tw.rpi.edu
Received on Monday, 19 September 2011 20:34:31 UTC

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