- From: James Malone <malone@ebi.ac.uk>
- Date: Fri, 10 Jun 2011 10:26:27 +0100
- To: Helena Deus <helenadeus@gmail.com>
- CC: "'Michael Miller'" <mmiller@systemsbiology.org>, public-semweb-lifesci@w3.org, "'Jun Zhao'" <jun.zhao@zoo.ox.ac.uk>, "'Tomasz Adamusiak'" <tomasz@ebi.ac.uk>
Just FYI since a few people have emailed me offline about why they aren't seeing their gene of interest when they query the RDF; this first pass only selected the top 10 differentially epxressed genes per experiment. We are going to expand this in our second run shortly to get almost all of them. Will ping the list when we've done this. Cheers, James On 09/06/2011 17:28, Helena Deus wrote: > Hi All > > That is fantastic news :-) > Was the EFO model used for this data? > > Cheers, > Lena > > -----Original Message----- > From: public-semweb-lifesci-request@w3.org > [mailto:public-semweb-lifesci-request@w3.org] On Behalf Of Michael Miller > Sent: 09 June 2011 15:59 > To: public-semweb-lifesci@w3.org > Cc: Jun Zhao; Tomasz Adamusiak; James Malone > Subject: GXA triples > > hi all, > > jun zhao has kindly hosted the initial go at triplifying the Gene Expression > Atlas (james' and tomasz' efforts) > > http://www.open-biomed.org.uk/sparql/endpoint/gxa > >> To access a UI for the SPARQL endpoint, please go to: >> >> 1. http://www.open-biomed.org.uk/sparql/query.html >> 2. and set path to endpoint to: endpoint/gxa > see below for more info. > > cheers, > michael > > > Michael Miller > Software Engineer > Institute for Systems Biology > >> -----Original Message----- >> From: Jun Zhao [mailto:jun.zhao@zoo.ox.ac.uk] >> Sent: Thursday, June 09, 2011 5:16 AM >> To: tomasz.adamusiak@ebi.ac.uk >> Cc: Tomasz Adamusiak; James Malone; Michael Miller >> Subject: Re: Model blank nodes for GEA data >> >> Dear all, >> >> I am pleased to let you know that the SPARQL endpoint is now up and >> running at: >> >> http://www.open-biomed.org.uk/sparql/endpoint/gxa >> >> which has constraints such as not allowing COUNT queries. >> > <snip> >> Have a go and let me know what you think:) >> >> I wrote the following text in case you would like to announce it >> publicly after running some test queries on it. >> >> ============== >> >> The total number of triples is ~37 million. They were loaded in a >> triple store powered by Jena TDB and Milarq. >> >> The data can be accessed at the SPARQL endpoint: >> >> http://www.open-biomed.org.uk/sparql/endpoint/gxa >> >> To access a UI for the SPARQL endpoint, please go to: >> >> 1. http://www.open-biomed.org.uk/sparql/query.html >> 2. and set path to endpoint to: endpoint/gxa >> >> You can run the ASK query to test the endpoint. >> >> However, to ensure the quality of the SPARQL endpoint, it does not >> support by default queries with COUNT etc. If you do need to test such >> queries, please email us and we will send you the more open access >> SPARQL endpoint. >> >> ============= >> >> cheers, >> >> Jun >> > <snip> > -- European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SD, United Kingdom Tel: + 44 (0) 1223 494 676 Fax: + 44 (0) 1223 494 468
Received on Friday, 10 June 2011 09:27:06 UTC