- From: M. Scott Marshall <marshall@science.uva.nl>
- Date: Fri, 21 May 2010 17:28:39 -0700
- To: HCLS <public-semweb-lifesci@w3.org>
Here are the minutes for Tuesday's COI teleconference. Thanks to Joshua for scribing. Cheers, Scott Session Start: Tue May 18 08:00:49 2010 Session Ident: #hcls [08:00] * Now talking in #hcls [08:03] * Zakim has joined #hcls [08:03] * RRSAgent has joined #hcls [08:03] <RRSAgent> logging to http://www.w3.org/2010/05/18-hcls-irc [08:04] * holger_stenzhorn has joined #hcls [08:09] <mscottm> Joshua: effort in CDISC called SHARE - descriptions of data elements [08:11] <mscottm> Scott: Need to align efforts to describe data resources/repositories in order to have a federation [08:11] * Helen has joined #hcls [08:12] <mscottm> Joshua: caBIG is creating descriptions of data sources accompanied by UML models with references to the NCI Thesaurus [08:12] <Helen> The wiki page on contradiction rules and proofs are here [08:12] <Helen> http://esw.w3.org/HCLS/ClinicalObservationsInteroperability/ContradictionRule#Detecting_Contradiction_in_Eligibility_Criteria_Using_Rules_and_Proofs [08:12] <mscottm> Zakim, this is coi [08:12] <Zakim> ok, mscottm; that matches SW_HCLS(COI)11:00AM [08:12] <mscottm> Zakim, who is here? [08:12] <Zakim> On the phone I see +1.703.787.aaaa, mscottm, ??P17, +1.519.888.aabb [08:12] <Zakim> On IRC I see Helen, holger_stenzhorn, RRSAgent, Zakim, mscottm, Joshua, trackbot, ericP [08:13] <Helen> http://esw.w3.org/HCLS/ClinicalObservationsInteroperability/ContradictionRule#Detecting_Contradiction_in_Eligibility_Criteria_Using_Rules_and_Proofs [08:13] <holger_stenzhorn> zakim, ??P17 is holger_stenzhorn [08:13] <Zakim> +holger_stenzhorn; got it [08:15] * vipul has joined #hcls [08:15] * csaba has joined #hcls [08:15] <Zakim> + +1.860.226.aacc [08:16] <mscottm> Joshua: setup a CentOS VM at Semantic Bits, Eric accessed it but wasn't able to compile everything at that time but installed an executable that worked with some small examples. [08:16] <Zakim> +??P26 [08:17] <mscottm> ..working on linking scenario in BRIDG model to the COI dataset, example: no hypertension represented in current COI dataset [08:17] <mscottm> ..link BRIDG to intermediate model, then to COI models [08:18] <mscottm> ..similar to CDISC/SDTM to HL7/RIM in COI [08:19] <mscottm> Helen: Eric did the tooling to bridge the models. Jyoti did something with a SPARQL query - I will look that up. [08:19] <Helen> http://esw.w3.org/HCLS/ClinicalObservationsInteroperability/SPARQL8.html [08:20] <mscottm> Vipul: Wasn't specifically HL7 RIM, but similar [08:22] <vipul> Clinical Practice Ontology: http://esw.w3.org/images/7/7d/HCLS%24%24ClinicalObservationsInteroperability%24ClinicalPractice-Ontology-Version4.owl [08:22] <mscottm> Joshua: next step is BRIDG to DCM rules [08:23] <vipul> Clinical Trials Ontology (SDTM based) http://esw.w3.org/images/6/63/HCLS%24%24ClinicalObservationsInteroperability%24SDTM-Version4.owl [08:23] <Helen> http://esw.w3.org/HCLS/ClinicalObservationsInteroperability [08:24] <vipul> Clinical Practice Ontology Presentation Slides: http://esw.w3.org/images/9/98/HCLS%24%24ClinicalObservationsInteroperability%24ClinicalPractice-Ontology-Version-3.ppt [08:25] <vipul> Clinical Trials Ontology Presentation Slides: http://esw.w3.org/images/e/e4/HCLS%24%24ClinicalObservationsInteroperability%24ClinicalTrials-Ontology-Version-2.ppt [08:25] <Joshua> helen: interesting step would be to ask BCT.org for more realistic rules [08:25] <Joshua> helen: also looking at visualization [08:30] <Joshua> helen: will elaborate rules to include anatomical knowledge and procedures [08:32] <Joshua> scott: it would be useful to consider how this scenario could work with EHR data [08:32] <Joshua> mscottm: how could we use TMO here? [08:33] <Joshua> vipul: need to re-work existing content around EHR and agrees we should use TMO [08:34] <Joshua> vipul: suggests - get BRIDG-based approach working first and then look at TMO [08:34] <vipul> I agree with the EHR packaging idea [08:34] <vipul> ! [08:36] <Joshua> mscottm: we should re-organize the site content to be more unified and navigable across task forces [08:38] <vipul> agreed! [08:42] <Joshua> mscottm: we might be able to use the OpenVista SPARQL endpoint [08:43] <mscottm> Conor Dowling's recent demo: http://www.caregraf.org/veganvet/demo [08:44] <vipul> Aviel Klausner, PhD from Intersystems [08:45] <vipul> aviel@intersystems.com [08:45] <Joshua> vipul: can someone invite these people to COI meetings? [08:45] <Joshua> mscottm: will invite Conor Dowling [08:46] <Joshua> vipul: will invite Aviel Klausner [08:46] <Joshua> vipul: has worked to involve Ken Beutow [08:46] <Joshua> s/Beutow/Buetow/g [08:49] <Joshua> Joshua: will coordinate with Elly Cohen [08:49] <Joshua> Helen: Joshua and Helen will work together on the next tcon to explore the BCT data. [08:50] <Joshua> Helen: who will clean up the HCLS web site? [08:51] <Joshua> mscottm: let's shelve it for later [08:51] <Zakim> -holger_stenzhorn [08:51] <Zakim> -??P26 [08:51] <Zakim> - +1.519.888.aabb [08:51] <Zakim> - +1.703.787.aaaa [08:51] <Zakim> -mscottm [08:51] * Joshua has quit IRC (Quit: http://www.mibbit.com ajax IRC Client) [08:51] <Zakim> - +1.860.226.aacc [08:51] <Zakim> SW_HCLS(COI)11:00AM has ended [08:51] <Zakim> Attendees were +1.703.787.aaaa, mscottm, +1.519.888.aabb, holger_stenzhorn, +1.860.226.aacc [08:51] * vipul has quit IRC (Quit: Page closed) [08:58] * csaba has quit IRC (Ping timeout) [09:00] * Helen has quit IRC (Quit: http://www.mibbit.com ajax IRC Client)
Received on Saturday, 22 May 2010 00:29:07 UTC