- From: Peter Ansell <ansell.peter@gmail.com>
- Date: Tue, 15 Sep 2009 09:07:20 +1000
- To: Matthias Samwald <samwald@gmx.at>
- Cc: public-semweb-lifesci <public-semweb-lifesci@w3.org>, Anja Jentzsch <anja@anjeve.de>
I integrated this as a source for both DBpedia and Mesh on Bio2RDF in a similar way to your OBO2DBpedia mappings. See [1] for example. The equivalent Mesh term contains all of the Pubmed references as links [2]. Cheers, Peter [1] http://qut.bio2rdf.org/dbpedia:Primary_motor_cortex [2] http://qut.bio2rdf.org/mesh:D009044 2009/9/15 Matthias Samwald <samwald@gmx.at>: > I created a mapping between MeSH and DBpedia. The mapping is based on > explicit mentions of MeSH entries that can be extracted Wikipedia/DBpedia. > The preliminary result of this effort is a Turtle file with 2600 > rdfs:seeAlso. It can be found at > http://samwald.info/res/dbpedia_mesh_mapping.ttl > > The statements look like this: > <http://dbpedia.org/resource/Primary_motor_cortex> rdfs:seeAlso > <http://purl.org/commons/record/mesh/D009044> . > > > I added the mapping to the HCLS Knowledge Base (http://hcls.deri.org/sparql > ). It can be queried like this: > > ===== > SELECT * WHERE { > GRAPH <http://samwald.info/res/dbpedia_mesh_mapping.ttl> > {?s ?p ?o} > } > LIMIT 10 > ===== > > > For example, this allows us to use the DBpedia-MeSH-PubMed connection to > find PubMed abstracts that match a certain DBpedia entry. E.g, for > http://dbpedia.org/resource/Primary_motor_cortex, we can query the HCLS > Knowledge Base like this: > > ===== > PREFIX dbpedia_uri: <http://dbpedia.org/resource/Primary_motor_cortex> > PREFIX dc: <http://purl.org/dc/elements/1.1/> > PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> > > SELECT ?pubmed_uri WHERE { > GRAPH <http://samwald.info/res/dbpedia_mesh_mapping.ttl> > { dbpedia_uri: rdfs:seeAlso ?mesh_uri . } > > GRAPH <http://purl.org/science/graph/medline/subject-headings> > { ?pubmed_uri ?o ?mesh_uri . } > } > LIMIT 5 > ===== > > > Result: > http://purl.org/commons/record/pmid/4319929 > http://purl.org/commons/record/pmid/4951845 > http://purl.org/commons/record/pmid/6015242 > http://purl.org/commons/record/pmid/4999957 > http://purl.org/commons/record/pmid/5633926 > [...] > > > Further documentation and a link to the PHP script that was used to generate > the mapping: > http://esw.w3.org/topic/HCLSIG_BioRDF_Subgroup/DBpedia_to_OBO_mapping > I hope this is helpful to some people reading this list. > > > Cheers, > Matthias Samwald > > DERI Galway, Ireland > http://deri.ie/ > > Konrad Lorenz Institute for Evolution & Cognition Research, Austria > http://kli.ac.at/ > >
Received on Monday, 14 September 2009 23:07:55 UTC