- From: Helen Parkinson <parkinson@ebi.ac.uk>
- Date: Tue, 01 Sep 2009 14:37:26 +0100
- To: Kei Cheung <kei.cheung@yale.edu>
- CC: HCLS <public-semweb-lifesci@w3.org>, "tomasz.adamusiak@gmail.com" <tomasz.adamusiak@gmail.com>
One of my action items following the call was to circulate a link to a
text-ontology mapping application
https://sourceforge.net/projects/efo/files/
It's a perl implementation of the metaphone algorithm and we use it to
map free text values entered via our older annotation tools to ontology
terms vs an OWL or OBO format ontology. The performance depends largely
on how well the ontology is aligned with the input data, for this reason
we developed our own ontology. It's being used in EBI and also by
colleagues at UPenn
Comments and questions welcome, Tomasz Adamusiak is the developer and
cc'd if there are any questions
thanks
Helen
Kei Cheung wrote:
> The minutes of today's BioRDF call are available at:
>
> http://esw.w3.org/topic/HCLSIG_BioRDF_Subgroup/Meetings/2009/08-31_Conference_Call
>
>
> Thanks to:
>
> Helen for giving a report on neuroscience mciroarray data curation;
> Sudeshna for giving an informative presentation;
> Lena for scribing.
>
> Cheers,
>
> -Kei
>
> Kei Cheung wrote:
>> This is a reminder that the next BioRDF telcon. call will be held at
>> 11 am EDT (5 pm CET) on Monday, August 31 (see details below).
>>
>> The description of the microarray use case is available at:
>>
>> http://esw.w3.org/topic/HCLSIG_BioRDF_Subgroup/QueryFederation2
>>
>> Cheers,
>>
>> -Kei
>>
>> == Conference Details ==
>> * Date of Call: Monday August 31, 2009
>> * Time of Call: 11:00 am Eastern Time
>> * Dial-In #: +1.617.761.6200 (Cambridge, MA)
>> * Dial-In #: +33.4.89.06.34.99 (Nice, France)
>> * Dial-In #: +44.117.370.6152 (Bristol, UK)
>> * Participant Access Code: 4257 ("HCLS")
>> * IRC Channel: irc.w3.org port 6665 channel #hcls (see
>> [http://www.w3.org/Project/IRC/ W3C IRC page] for details, or see
>> [http://cgi.w3.org/member-bin/irc/irc.cgi Web IRC])
>> * Duration: ~1 hour
>> * Frequency: bi-weekly
>> * Convener: Kei Cheung
>>
>> == Agenda ==
>> * Roll call and introduction (Kei)
>> * HCLS KB update (Matthias, Adrian)
>> * Update on neuroscience microarray data curation (Helen) *
>> Presentation: "Semantic Annotation of Genomics Experiments" (Sudeshna)
>> * Q&A and discussion (All)
>>
>>
>>
>
>
--
Helen Parkinson, PhD
ArrayExpress Production Coordinator,
Microarray Informatics Team,
EBI
EBI 01223 494672
Skype: helen.parkinson.ebi
Received on Tuesday, 1 September 2009 13:38:17 UTC