- From: Mark <markw@illuminae.com>
- Date: Wed, 14 Oct 2009 07:35:12 -0700
- To: "Matthias Samwald" <samwald@gmx.at>
- Cc: public-semweb-lifesci <public-semweb-lifesci@w3.org>
Hi Matthias! I surrender to all your arguments below, and to those of Michel also :-) I think we are simply talking from different perspectives and life/career-situations that have different immediate needs. I don't do "biological research" per se, so for me a warehouse (semantically-enabled or not) is not a useful end-point; however, I can see how it might be useful, and might be the FODDER for research, especially for those interested in answering biological questions. My problem is that I have to justify - to funding bodies, to my department head, to my tenure-review committee, and to my external reviewers - how this semantic web "stuff" is in any way research! This becomes a very difficult case to make when the most obvious outcomes from the community to date are (a) ontologies used for annotation, and (b) warehouses. It's hard to argue against a reviewer who comments that, as far as they can tell, the purpose of the semantic web is to come up with a fancy and expensive way to construct a database! Anyway, I don't see that I have anything more useful to say on the subject. The counter-arguments are valid, and I believe that my perspective is also valid. The two "sides" (though I think we're all on the same "side" :-) ) simply have different end-requirements for engaging in the activity in the first place. I'm just being grumpy about the issue due to personal challenges related to the topic we are discussing :-) Cheers all! Mark On Wed, 14 Oct 2009 06:55:43 -0700, Matthias Samwald <samwald@gmx.at> wrote: > Hi Mark, > >> Moreover, warehousing in and of itself isn't research, nor is it pushing >> "the state of the art", > > I have become a bit weary of this interpretation of 'pushing the state of > the art' in this context. Looking at the set of standards, datasets, > tools, > practices around RDF/OWL that we now have available, I think that the > Semantic Web community has made astonishing accomplishments in the last > decade. These things open up great possibilities that most people > outside of > the community have not even become aware of. > I would be glad to see more researchers in the community directing their > research towards APPLYING this existing set of excellent technologies to > problems in the real world, rather than solely 'pushing the state of the > art' regarding the underlying technology. This does not mean that there > is > no place for basic research anymore -- there are many important and > intriguing research questions around usability, the development of > domain-specific vocabularies / ontologies, the specific needs and > requirements of certain domains, et cetera. > > I also wish that funding agencies would do more towards encouraging the > translation of results from basic Semantic Web / Linked Data research > into > practical applications. There would be many exciting questions for basic > research hidden in that research program, and it might help to increase > the > positive impact of our work so far. > >> We don't need RDF to make warehouses! > > RDF enables us to do many things. Among these things is the possibility > to > aggregate different datasets into a single triplestore, where the > datasets > are integrated ad-hoc by virtue of shared identifiers, taxonomies and > ontologies. If needed, parts of the triplestore can be exported as RDF, > integrated with other data, re-purposed et cetera with great ease. This > is > very different from a classical "data warehouse" (as I understand it), > where > a lot of code has to be written and manual integration work has to be > done, > and where it is very difficult to re-purpose, 'mix and mash' data once > it is > inside the warehouse. > >> This is why I am "irked" when I see our own group admitting that >> RDF-Web-crawling is "nice", but it's just too much fuss, so we'll >> capitulate and build a warehouse anyway. > > Again, I think you are introducing a false dichotomy. There is no > 'capitulation' here, nor is it making a choice between two mutually > exclusive options. We can make both things part of our toolset, and > select > the right tool for each task that we are facing. Furthermore, we are not > building a 'warehouse', as described above. > > Have a nice time in Banff, > Matthias >
Received on Wednesday, 14 October 2009 14:42:23 UTC