- From: Helen Parkinson <parkinson@ebi.ac.uk>
- Date: Tue, 13 Oct 2009 06:00:35 +0100
- To: kei cheung <kei.cheung@yale.edu>, HCLS <public-semweb-lifesci@w3.org>, Tony Burdett <tburdett@ebi.ac.uk>
Received on Tuesday, 13 October 2009 05:01:13 UTC
Hi here are my action items from the call today 1. MAGE-TAB->RDF, Lena requested details. Code here: https://sourceforge.net/projects/limpopo/ Java Parser for MAGE-TAB developed by EBI, used by several groups. Contact Tony Burdett tburdett@ebi.ac.uk for details. Tony estimates for a simple RDF dump a few days work. Lena if you are interested in working on this java code please contact Tony as he's already designed with rdf export in mind 2. MAGE-TAB->MAGE-ML - code from Junmin Liu at UPenn https://sourceforge.net/projects/tab2mage/files/ - see mage2tab Pretty much all public MAGE-ML comes from AE and is available from Arrayexpress ftp dirs as mage-tab already. Exceptions are Rosetta's mage-ml importer, and non public data 3. EBI experimental factor ontology (EFO) slides, attached see also www.ebi.ac.uk/efo 4. Noted that an RDF dump of atlas data and triple store access will be useful, we'll announce when these are available thanks Helen
Received on Tuesday, 13 October 2009 05:01:13 UTC