Action Items from call today

Hi

here are my action items from the call today

1. MAGE-TAB->RDF, Lena requested details.

Code here: https://sourceforge.net/projects/limpopo/

Java Parser for MAGE-TAB developed by EBI, used by several groups. 
Contact Tony Burdett tburdett@ebi.ac.uk for details. Tony estimates for 
a simple RDF dump a few days work. Lena if you are interested in working 
on this java code please contact Tony as he's already designed  with rdf 
export in mind

2. MAGE-TAB->MAGE-ML  - code from Junmin Liu at UPenn

https://sourceforge.net/projects/tab2mage/files/  - see mage2tab
Pretty much all public MAGE-ML comes from AE and is available from 
Arrayexpress ftp dirs as mage-tab already. Exceptions are Rosetta's 
mage-ml importer, and non public data


3. EBI experimental factor ontology (EFO) slides, attached
see also www.ebi.ac.uk/efo

4. Noted that an RDF dump of atlas data and triple store access will be 
useful, we'll announce when these are available

thanks

Helen

Received on Tuesday, 13 October 2009 05:01:13 UTC