- From: Eric Prud'hommeaux <eric@w3.org>
- Date: Mon, 23 Jun 2008 10:32:53 -0400
- To: public-hcls-coi@w3.org, public-semweb-lifesci@w3.org
- Message-ID: <20080623143253.GD7266@w3.org>
kinda late, but here they are:
http://www.w3.org/2008/06/10-hcls-minutes
COI
10 Jun 2008
See also: [2]IRC log
Attendees
Present
EricP, Helen_Chen, +1.919.541.aaaa, holger_stenzhorn, Jennifer,
+1.813.396.aabb, Chimezie_Ogbuji, Rachel
Regrets
Chair
ericP
Scribe
holger_stenzhorn
Contents
* [3]Topics
1. [4]Roll Call
2. [5]end-to-end
3. [6]Updated Clinical Practice Ontology (Version 4)
* [7]Summary of Action Items
__________________________________________________________________
<ericP> [8]agenda
<ericP> scribenic: holger_stenzhorn
<ericP> ile&do=get&target=ClinicalPractice-Ontology-Version4.owl
Roll Call
<ericP> holger_stenzhorn: busy last week (at ESWC); just got back
ericP: Helen, are the things that I and Holger did good
Helen: I have some small suspicions
ericP: not sure whether the CTO user would use the brand anmes (e.g.
Zoloft)
..: Helebn, what do you expect there...
end-to-end
<ericP> [9]end-to-end
<ericP> Helen: sample.ttl administered two drugs
<ericP> ... one is a positive pressure something-or-other; is it a
drug?
ericP: the databse does not include all the things we need
Helen: I understand what you are doing badically
<ericP>
<ericP> [[
<ericP> ?m :pRoutOfAdministration routeOfAdmin:15 ;
<ericP> :pFreqUnits freqUnits:3 ;
<ericP> :pFormOfMedication formOfMedication:0 ;
<ericP> :pMedDict ?dictEntry ;
<ericP> :pMedication ?administration ; :pDose 2 .
<ericP> ]]
<ericP> Helen: there is none one with a :pDose of 2
ericP: Helen, you can check the rules and play around with them and I
can then fix them
<ericP> [10]Diab data
Helen: you only have only patient
ericP: if you look at the different data, you see that there are more
partients
..: just took one patient to do a complete end-to-end test
...: let me know if there are things to be fixed
... perform mapping from CTO to CPO and the other way around
ericP: since Chime is here we want to talk about what Chime might be
able to add
...: talking about CTO and querying
... Chuime, can you talk abouzt what you are doing...
... I took bits and pieces out of the ontologies for the mapping
... what pieces can we take out of Chimes ontologies for this task
Chime: pretty good correspondence of the classes on that page with my
ontology
... interest for a reference ontology in the medical domain, for health
records
ericP: are there pointers to the CPR?
<chimezie> [11]http://purl.org/cpr/owl
<ericP> [12]CPR Ontology
<ericP> [13]SPARQL Queries on CTO
ericP: is anybody interested in keeping the the SDTM and HL7...
<ericP> line 1[[BR]]line 2...
Holger: Vipul should give his word
ericP: Helen, waht would you like to work with?
Helen: I want to see Chime to do a maaping as well
...: the value of is how to get to the data
<ericP> Helen: true value is to see how you get the data -- mapping to
a coding system
...: we need to show how the terms can be identified
ericP: I do not know the ontologies really - so I did the mapping
"mechanically"
...: I scooped all the data but did not really know what the data was
Helen: we need to show how to use the existing heterogeneous data base
ericP: Helen, could you identify the ontological clues to find the
important thing in the data
...: Joyti provided some information on that on the wiki
<ericP> [14]source, target, mapping
<ericP> rxnorm:Metformin
<chimezie> there is a reference to rxNorm:..... classes
Helen: I can send a mail with a reference to the names
ericP: Chime can work with Holger on extending the SPARQL8.html
Chime: will do
Updated Clinical Practice Ontology (Version 4)
* [15]http://esw.w3.org/topic/HCLS/ClinicalObservationsInteroperabili
ty?action=AttachFile&do=get&target=ClinicalPractice-Ontology-Versio
n4.owl
ericP: anybody looked at the updated CPO?
<ericP>
<ericP>
<ericP> [16]updated CPO (v4)
ericP: how is taking care of the inter ontology mapping page for CPO?
Vipul?
eric: who is interested in the update in the CPO? me, because of the
mapping.,..
ericP: Rachel, what are you actually interested in?
Rachel: I am just intersetingly listening, watching the process but
cannot be too useful at this moment
ericP: are you comfortable with N� language?
Rachel: I have never used it but can reasd and understand it
ericP: Jennifer, what's up with you?
Jeniffer: the same basically as Rachel - have been involved in OBI -
and in the methodology
ericP: Jen, might be interested in the work of Chime and Holger
...: Chime, do you think that any of the OBI work is distinctive
Chime: there is useful correspondence and when there is no
correspondence we can get feedback for the differences
ericP: it looks that Chime, Holger and Jen can put there heads together
and can look at the CTO together
... Helen can help me with the CPO
...: other like that we are done for today...
<jen> i wil be off for ten days on vacation; talk with you after that!
<ericP> bonne vacance
<ericP> ADJOURNED
Summary of Action Items
[End of minutes]
__________________________________________________________________
Minutes formatted by David Booth's [17]scribe.perl version 1.133
([18]CVS log)
$Date: 2008/06/23 14:32:15 $
References
Visible links
1. http://www.w3.org/
2. http://www.w3.org/2008/06/10-hcls-irc
3. http://www.w3.org/2008/06/10-hcls-minutes#agenda
4. http://www.w3.org/2008/06/10-hcls-minutes#item01
5. http://www.w3.org/2008/06/10-hcls-minutes#item02
6. http://www.w3.org/2008/06/10-hcls-minutes#item03
7. http://www.w3.org/2008/06/10-hcls-minutes#ActionSummary
8. http://lists.w3.org/Archives/Public/public-hcls-coi/2008AprJun/0084
9. http://www.w3.org/2008/04/DiabeticPatientsDataSet/end-to-end
10. http://www.w3.org/2008/04/DiabeticPatientsDataSet/
11. http://purl.org/cpr/owl
12. http://purl.org/cpr/owl
13. http://esw.w3.org/topic/HCLS/ClinicalObservationsInteroperability/SPARQL8.html
14. http://esw.w3.org/topic/HCLS/ClinicalObservationsInteroperability/InterOntologyMapping.html
15. http://esw.w3.org/topic/HCLS/ClinicalObservationsInteroperability?action=AttachFile&do=get&target=ClinicalPractice-Ontology-Version4.owl
16. http://esw.w3.org/topic/HCLS/ClinicalObservationsInteroperability?action=AttachFile&do=get&target=ClinicalPractice-Ontology-Version4.owl
17. http://dev.w3.org/cvsweb/~checkout~/2002/scribe/scribedoc.htm
18. http://dev.w3.org/cvsweb/2002/scribe/
Hidden links:
19. http://www.w3.org/2008/04/DiabeticPatientsDataSet/DPDS2CPO.n3
20. http://esw.w3.org/topic/HCLS/ClinicalObservationsInteroperability?action=AttachF
21. http://esw.w3.org/topic/HCLS/ClinicalObservationsInteroperability?action=AttachFile&do=get&target=ClinicalPractice-Ontology-Version4.owl
--
-eric
office: +1.617.258.5741 32-G528, MIT, Cambridge, MA 02144 USA
mobile: +1.617.599.3509
(eric@w3.org)
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Received on Monday, 23 June 2008 14:33:31 UTC