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Re: Demo Scenarios for COI Demo

From: <helen.chen@agfa.com>
Date: Tue, 26 Aug 2008 10:59:22 -0400
Cc: public-hcls-coi@w3.org, "w3c semweb HCLS" <public-semweb-lifesci@w3.org>, public-semweb-lifesci-request@w3.org
Message-ID: <OF41A1206C.C032E338-ON852574B1.00505ED1-852574B1.0052562B@agfa.com>

A few quick remarks about your demo scenarios:

I understand that the COI demo is meant to demonstrate how the following 
two types of boundaries between research (clinical trials) and clinical 
practice (healthcare data) are bridged:

1.  Clinical trial (research) vocabularies (we made clinical trial 
ontology) to healthcare data (we made clinical practice ontology and made 
mapping to HL7 vocabulary/ontology). 

2. High level drug class concepts to detailed patients prescription data 
with NDC codes.

The bridges include such tools as "concept mapping, for example, 
owl:sameAs or owl:equvilantClassOf", and inference rules, for example: 

#check all drugs that "may_treat  obese"
#{?A rdfs:subClassOf  ?B;
#    rdfs:label  ?D.
# ?B  a owl:Restriction;
#     owl:onProperty :may_treat;
#     owl:someValuesFrom :C0028754}
# ?A  a   :CTDrugName}. 

In the patient data we have for the COI demo, there is no "RxNorm" codes. 
We needs to state how we made the searching viable from ontology concepts 
-> RxNorm ingredients code -> NDC drug code -> patient prescription data

Will talk to you at the Tcon today. 

Kind Regards,

Helen Chen | Agfa HealthCare
Senior Researcher | HE/Advanced Clinical Applications Research
T  +1 519 746 6210 Ext.3186 | M  +1 647 400 1523

Agfa HealthCare Inc., 455 Phillip Street, Waterloo, ON N2L 3X2, Canada
Click on link to read important disclaimer: 

"Kashyap, Vipul" <VKASHYAP1@PARTNERS.ORG> 
Sent by: public-semweb-lifesci-request@w3.org
25/08/2008 04:12 PM

"w3c semweb HCLS" <public-semweb-lifesci@w3.org>
Demo Scenarios for COI Demo

First draft of demo scenarios is attached with this e-mail. 
<<Demo Scenarios.txt>> 

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[attachment "Demo Scenarios.txt" deleted by Helen Chen/AMPJB/AGFA] 
Received on Tuesday, 26 August 2008 15:05:12 UTC

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