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Re: UniProt RDF via HTTP

From: Alan Ruttenberg <alanruttenberg@gmail.com>
Date: Fri, 11 May 2007 12:12:38 -0600
Message-Id: <AC543C0C-404E-4C73-875B-31E2B323ADBF@gmail.com>
Cc: public-semweb-lifesci <public-semweb-lifesci@w3.org>
To: Eric Jain <Eric.Jain@isb-sib.ch>

Hello Eric,

Congratulations on this release!!

Is there http access given a lsid.

I have already figured out that I can get the html for  
urn:lsid:uniprot.org:uniprot:P00750  with:

http://beta.uniprot.org/? 
dataset=uniprot&query=urn:lsid:uniprot.org:uniprot:P00750&sort=score&luc 
ky=no&random=no

What url could I use to get the rdf,xml, and fasta versions  
respectively?

What do you consider to be the data and the metadata for the LSID?
Also, will you be using LSID versions, and, if so, how?

Thanks!

-Alan


On May 11, 2007, at 4:09 AM, Eric Jain wrote:

>
> For those of you who are interested in getting subsets of the  
> UniProt data for demos etc, the following may be of use.
>
> Get a single database entry:
>
> <http://beta.uniprot.org/uniprot/P00750.rdf>
> <http://beta.uniprot.org/taxonomy/9606.rdf>
> <http://beta.uniprot.org/pathways/9.149.94.241.rdf>
> ...
>
> Get all reviewed, human entries (16'267):
>
> <http://beta.uniprot.org/uniprot/?query=organism:9606 
> +reviewed:yes&format=rdf>
>
> Same as above, but only first 1'000 entries, and gzipped:
>
> <http://beta.uniprot.org/uniprot/?query=organism:9606 
> +reviewed:yes&format=rdf&offset=0&limit=1000&compress=yes>
>
> For other queries, just play with the nice Web interface :-)
>
> <http://beta.uniprot.org/>
>
Received on Friday, 11 May 2007 18:10:53 UTC

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