W3C home > Mailing lists > Public > public-semweb-lifesci@w3.org > June 2007

Re: HCLS SW "Web Metro Map"

From: William Bug <William.Bug@DrexelMed.edu>
Date: Tue, 5 Jun 2007 15:19:26 -0400
Message-Id: <A21F56D7-6B5D-4327-8A7E-E11468E2F977@DrexelMed.edu>
Cc: "Kei Cheung" <kei.cheung@yale.edu>, "Forsberg, Kerstin L" <Kerstin.L.Forsberg@astrazeneca.com>, public-semweb-lifesci@w3.org
To: ogbujic@ccf.org
Matthias mentions at the bottom of the web page he's created GraphViz  
(or it's Protege-OWL plugin - OWLViz).  The latter can automatically  
produce nice visualized graphs straight from an OWL file in Protege -  
giving the user the ability to expand or collapse specific nodes.

Inkscape - as he mentions - is a wonderful open source tool for  
creating very nice, static graphics (a little easier to use for this  
purpose than GIMP).

I would also bring up the tool & framework Alan has mentioned several  
times - Vizter (http://jheer.org/vizster/) and the underlying  
library, Prefuse (http://prefuse.org/).  This is an excellent tool  
set for creating dynamic views of complex, graphs where nodes are  
enriched with a constellation of properties which one would like to  
use to drive the slicing and dicing of the underlying RDF store.


On Jun 5, 2007, at 2:07 PM, Chimezie Ogbuji wrote:

> Very nice diagrams (I'd like to know what tools were used to create
> them), but I can't help but notice that the clinical realm is very  
> much
> under-represented - with the exception of the HCLS 'ecosystem'  
> diagram.
> -- 
> Chimezie Ogbuji
> Lead Systems Analyst
> Thoracic and Cardiovascular Surgery
> Cleveland Clinic Foundation
> 9500 Euclid Avenue/ W26
> Cleveland, Ohio 44195
> Office: (216)444-8593
> ogbujic@ccf.org
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Bill Bug
Senior Research Analyst/Ontological Engineer

Laboratory for Bioimaging  & Anatomical Informatics
Department of Neurobiology & Anatomy
Drexel University College of Medicine
2900 Queen Lane
Philadelphia, PA    19129
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Please Note: I now have a new email - William.Bug@DrexelMed.edu

Received on Tuesday, 5 June 2007 19:17:07 UTC

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