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Re: Hosted Triple Store Oracle RDF DM - and access to BioRDF examples in general

From: William Bug <William.Bug@DrexelMed.edu>
Date: Mon, 22 Jan 2007 09:20:44 -0500
Message-Id: <7ABF4380-0148-450A-BA35-4C1723D152C9@DrexelMed.edu>
Cc: public-semweb-lifesci <public-semweb-lifesci@w3.org>
To: Eric Jain <Eric.Jain@isb-sib.ch>
Many thanks for doing the follow-up, EricJ.

This is very helpful.

Cheers,
Bill

On Jan 22, 2007, at 6:21 AM, Eric Jain wrote:

>
> William Bug wrote:
>> Also - for loading remote LSID resources:
>> I thought I remembered after having loaded Roderick Page's Firefox  
>> LSID extension, I could just paste the following in the Firefox  
>> URL text box, hit return, and the plug-in contacted an LSID  
>> Resource Resolution server at IBM to return the resource.
>> My plug-ins stopped working when I upgraded to Firefox 2.0.  I  
>> just now went to the Sorceforge download page for Roderick's  
>> plugin and got the latest version (the first full release - v1.0.0).
>
> I believe the plug-in on SourceForge is a separate project, but  
> can't say for sure...
>
>
>> It installed just fine, but when I try to access:
>> urn:lsid:uniprot.org:keywords:462
>> I get an error back claiming "unknown protocol".
>> Anyone know what I'm doing wrong?
>
> It seems that you need to prefix the identifier with "lsidres:".
>
> Then, instead of "unknown protocol", you get "false"...
>
> Maybe this has something to do with the fact that we never set up a  
> resolver, but other identifiers don't seem to work, either:
>
> lsidres:urn:lsid:ncbi.nlm.nih.gov:pubmed:12571434 returns "false"
> lsidres:urn:lsid:ncbi.nlm.nih.gov.lsid.biopathways.org:pubmed: 
> 12441807 returns "Error retreiving authority WSDL"
> lsidres:urn:lsid:pdb.org:1AFT:1 returns "Error retreiving authority  
> WSDL"
>
> Maybe a simpler resolution mechanism may not be a bad idea after  
> all ;-)
>
>

Bill Bug
Senior Research Analyst/Ontological Engineer

Laboratory for Bioimaging  & Anatomical Informatics
www.neuroterrain.org
Department of Neurobiology & Anatomy
Drexel University College of Medicine
2900 Queen Lane
Philadelphia, PA    19129
215 991 8430 (ph)
610 457 0443 (mobile)
215 843 9367 (fax)


Please Note: I now have a new email - William.Bug@DrexelMed.edu





Received on Monday, 22 January 2007 14:21:09 UTC

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