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Re: Martone's Ontology

From: William Bug <William.Bug@DrexelMed.edu>
Date: Thu, 11 Jan 2007 12:32:40 -0500
Message-Id: <2B8F6B22-9F3C-471B-A5BB-C9E730DE354B@DrexelMed.edu>
Cc: Donald Doherty <donald.doherty@brainstage.com>, public-semweb-lifesci hcls <public-semweb-lifesci@w3.org>, Maryann Martone <mmartone@ucsd.edu>, Stephen Larson <slarson@ucsd.edu>
To: William Bug <William.Bug@DrexelMed.edu>
Sorry for the double post, but the end of that previous email somehow  
got truncated:

Do you have a copy of their SfN presentation?

Maryann or her grad student Stephen Larson who is working directly on  
SAO development would be able to provide the definitive answer to  
your request.

As to your statement regarding its use, I completely agree.  It would  
also be useful to speak with Stephen to find out whether they have  
talked with the GO developers regarding alignment with the GO- 
CellularComponent subsumptive trunk, which I believe is being  
refactored to bring it more in line with OBO Foundry recommendations.  
There are also other ontologies and classification schemes covering  
macromolecular complexes.  Stephen may have some suggestions on how  
to integrate those, as well.

Finally, I believe Stephen may have valuable suggestions regarding  
the use of Rule-based formalisms to represent the more complex  
subcellular component relations.


On Jan 11, 2007, at 12:20 PM, William Bug wrote:

> Hi Don,
> I think it is ready for use.
> Here is a presentation Maryann gave recently on use of SAO to  
> annotate electron tomographic data sets:
> <ImageAnnotationForEM- 
> LFongLChenRWestMWongSLamontAGuptaMEMartone-4ICET-Dec2006.pdf>
> <mime-attachment.html>

Bill Bug
Senior Research Analyst/Ontological Engineer

Laboratory for Bioimaging  & Anatomical Informatics
Department of Neurobiology & Anatomy
Drexel University College of Medicine
2900 Queen Lane
Philadelphia, PA    19129
215 991 8430 (ph)
610 457 0443 (mobile)
215 843 9367 (fax)

Please Note: I now have a new email - William.Bug@DrexelMed.edu

Received on Thursday, 11 January 2007 17:32:55 UTC

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