- From: Eric Prud'hommeaux <eric@w3.org>
- Date: Thu, 15 Feb 2007 18:30:02 +0100
- To: W3C HCLSIG <Public-semweb-lifesci@w3.org>
- Cc: Eric Neumann <eneumann@teranode.com>
- Message-ID: <20070215173001.GC8145@w3.org>
http://www.w3.org/2007/02/15-hcls-minutes
[1]W3C
HCLSIG
15 Feb 2007
See also: [2]IRC log
Attendees
Present
Vipul_Kashyap, Don_Doherty, EricP, Olivier_Bodenreider,
Bill_Bug, chimezie, Eric_Neumann, Jim_Mcgurk, Pam, Joanne,
Alan, Susie_Stephens
Regrets
Chair
ericN
Scribe
ericP
Contents
* [3]Topics
1. [4]Convene, take roll, review record
2. [5]Propose next HCLS call Feb 22, 2007, nominate a scribe
3. [6]Vocabulary Versioning -- input from clinical terminology
community (report from caBIG terminology panel with Harold
Sobrig and Chris Shute)
4. [7]Task Update
5. [8]Demo progress
* [9]Summary of Action Items
_________________________________________________________________
Convene, take roll, review record
PROPOSED: accept [10]minutes from last week as a true record
<jluciano2> second
APPROVED
Propose next HCLS call Feb 22, 2007, nominate a scribe
ericN: will be absent next week
... next meeting will be 22 Feb if Tonya can chair
ericN: pharma and clinical trials folks not engaged with
[11]http://DetailedClinicalModels.org
vipul: main player is Stan Huff from Intermountain Healthcare. this
person would be a good contact
<BillBug>
[12]http://www.detailedclinicalmodels.org/wiki/index.php?title=Main_Pa
ge
<BillBug> DCM PubMed reference - PMID: 15360974
<BillBug> Integrating detailed clinical models into application
development tools.
<BillBug> Huff SM, Rocha RA, Coyle JF, Narus SP
<BillBug> Medinfo. 2004;11(Pt 2):1058-62
<BillBug> VP: Represent in XML Schema now - Partners & Alan Rector
working with them on OWL representation
ACTION: vipul to invite Stan Huff to present his work to this group
[recorded in
[13]http://www.w3.org/2007/02/15-hcls-minutes.html#action01]
Vocabulary Versioning -- input from clinical terminology community (report
from caBIG terminology panel with Harold Sobrig and Chris Shute)
ericP: any member of the IG may be an editor
ericN: person needs to be engaged and committed
<BillBug> I'm working directly on this issue with BIRNLex & OBI -
working with NCBO, too. I've also got an ongoing discussion with
Gilberto Fragoso at NCICB who works on NCIT.
<jluciano2> I'm interested in the Editing work, I've just been busy
and not been able to cycle around to getting back on this.
<jluciano2> right, and because at this moment I've not been able to
commit...
ericN: [caBIG terminology panel report]
... acknowledged importance of using OWL
<alanr> is this same as earlier call for SWD vocabulary management
editor?
<jluciano2> Was anyone able to get an idea of how much time commitment
would be necesssary and over what period of time???
ericN: find editor and group for semweb versioning of ontologies
... would like to get Harold ... involved
vipul: what about Daniel Rubin?
ericN: he's already committed
BillBug: what's the role of SKOS here?
ericN: ??? is already connected
alanr: same as earlier call for SWD editor?
... trying to get idea of scope
... suggest someone from OBI (Open Biomedical Initiative)
<BillBug> As AR said, OBI & GO are working together on issues related
to version.
alanr: I may have a volunteer depending on scope
... reluctant myself due to growing committments
ericN: You are not satisfied with Ivan's response on this?
<scribe> ACTION: ericN to give a job description of editor's role for
??? document [recorded in
[14]http://www.w3.org/2007/02/15-hcls-minutes.html#action02]
<jluciano2> i have to sign off now.
take care everyone.
chimezie: versioning is in the critical path of ontology development
work we are doing at CCF
BillBug: this doc is vocab versioning in generral, but you [ericN]
want a conduit from HCLS?
Task Update
vipul: 1? 2? 3: will give presentation on brain form ontologies
... docs from AMS meeting: ??? and best practices
... no draft available
ericN: would like everyone to put up their working drafts, no matter
how rough
ACTION: all coordinators (ericN, vipul, susie, chen, AJ) to post links
to draft wiki pages to the list [recorded in
[15]http://www.w3.org/2007/02/15-hcls-minutes.html#action03]
Demo progress
Susie: vipul and I holding join BioOnt/BioRDF to coordinate demo
... outstanding action to write up scientific side of parkinsons and
alzheimers use cases
... action on John Barkley to document advantages of RDF
... after that, can work on connecting the use cases
... propose informal hacking sessions
ericN: F2Fs best informal
... cannot be an [official] HCLS f2f
-> [16]http://www.w3.org/2000/09/dbwg/details?group=38539 HCLS Working
Group membership page
ACTION: BillBug to fill out IE form noting [17]Policy for Approval of
Invited Experts [recorded in
[18]http://www.w3.org/2007/02/15-hcls-minutes.html#action04]
ACTION: Susie, vipul to organize demo hacking session [recorded in
[19]http://www.w3.org/2007/02/15-hcls-minutes.html#action05]
alanr: need to immediately roust other parties from outside of
BioOnt/BioRDF
Susie: reallistic demo core likely to be discussed on monday
... more stuff can be added to the demo, reallistically, for after WWW
ericN: pfizer has contributed data
ACTION: EricN will discuss tox data with Alan when we meet [recorded
in [20]http://www.w3.org/2007/02/15-hcls-minutes.html#action06]
vipul: someone from DSC should participate on Monday so that the demo
includes this data (above the data simply merging)
<alanr> +1
<alanr> SW gathering is 1 month away. Would be better to meet in next
week or two
alanr: [summary or where things are and what's required]
alanr: suggested on Monday that interested parties to look at the
galleries on [21]http://perfuse.org/
... am using that toolkit
<eneumann2> also look at ... [22]http://simile.mit.edu/exhibit/
alanr: can link from a gene to all the images for that gene
<eneumann2> Rob Williams has offered to get m-birn mouse gene
expression data for us
<eneumann2> .... Mark Ellisman (BIRN) has offered to direct 2 people
from BIRN to help us where possible
alanr: access to ontologies, eg. brain anatome, nerve receptors...
... may need to construct small ontology of ...
... bit of the demo can work on communications of synapses
<BillBug> We've been accumulating distilled/structured knolwedge
sources for all the domains AR asked for on the BIoONT wiki
alanr: i'll try to post this to the list to the IG list
<BillBug> for Synapses: see PMID 17098931
<BillBug> SynDB: a Synapse protein DataBase based on synapse ontology.
<BillBug> Includes synapse element ontology (SynO)
alanr: would like to log SPARQL queries as the demo progress
ACTION: alanr to mail his grocery list to the IG mailing list
[recorded in
[23]http://www.w3.org/2007/02/15-hcls-minutes.html#action07]
BillBug: most of those groceries are already in the wiki
... would be compelling to show gensat images
<alanr> the allen data has cross pointers to gensat.
<vipul> Alan: Can you help define the synapse ontology task better?
ACTION: EricN, BB, Alan TC to talk about what to ask from BIRN
[recorded in
[24]http://www.w3.org/2007/02/15-hcls-minutes.html#action08]
<vipul> May be some one from BIONT can pick it up?
<alanr> Let's talk on monday
Summary of Action Items
[NEW] ACTION: alanr to mail his grocery list to the IG mailing list
[recorded in
[25]http://www.w3.org/2007/02/15-hcls-minutes.html#action07]
[NEW] ACTION: all coordinators (ericN, vipul, susie, chen, AJ) to post
links to draft wiki pages to the list [recorded in
[26]http://www.w3.org/2007/02/15-hcls-minutes.html#action03]
[NEW] ACTION: BillBug to fill out IE form [recorded in
[27]http://www.w3.org/2007/02/15-hcls-minutes.html#action04]
[NEW] ACTION: EricN will discuss tox data with Alan when we meet
[recorded in
[28]http://www.w3.org/2007/02/15-hcls-minutes.html#action06]
[NEW] ACTION: EricN, BB, Alan TC to talk about what to ask from BIRN
[recorded in
[29]http://www.w3.org/2007/02/15-hcls-minutes.html#action08]
[NEW] ACTION: ericN to give a job description of editor's role for ???
document [recorded in
[30]http://www.w3.org/2007/02/15-hcls-minutes.html#action02]
[NEW] ACTION: Susie, vipul to organize demo hacking session [recorded
in [31]http://www.w3.org/2007/02/15-hcls-minutes.html#action05]
[NEW] ACTION: vipul to invite Stan Huff to present his work to this
group [recorded in
[32]http://www.w3.org/2007/02/15-hcls-minutes.html#action01]
[End of minutes]
_________________________________________________________________
Minutes formatted by David Booth's [33]scribe.perl version 1.127
([34]CVS log)
$Date: 2007/02/15 17:24:23 $
edited by ericP
References
1. http://www.w3.org/
2. http://www.w3.org/2007/02/15-hcls-irc
3. http://www.w3.org/2007/02/15-hcls-minutes#agenda
4. http://www.w3.org/2007/02/15-hcls-minutes#item01
5. http://www.w3.org/2007/02/15-hcls-minutes#item02
6. http://www.w3.org/2007/02/15-hcls-minutes#item03
7. http://www.w3.org/2007/02/15-hcls-minutes#item04
8. http://www.w3.org/2007/02/15-hcls-minutes#item05
9. http://www.w3.org/2007/02/15-hcls-minutes#ActionSummary
10. http://www.w3.org/2007/02/08-hcls-minutes
11. http://DetailedClinicalModels.org/
12. http://www.detailedclinicalmodels.org/wiki/index.php?title=Main_Page
13. http://www.w3.org/2007/02/15-hcls-minutes.html#action01
14. http://www.w3.org/2007/02/15-hcls-minutes.html#action02
15. http://www.w3.org/2007/02/15-hcls-minutes.html#action03
16. http://www.w3.org/2000/09/dbwg/details?group=38539
17. http://www.w3.org/2004/08/invexp
18. http://www.w3.org/2007/02/15-hcls-minutes.html#action04
19. http://www.w3.org/2007/02/15-hcls-minutes.html#action05
20. http://www.w3.org/2007/02/15-hcls-minutes.html#action06
21. http://perfuse.org/
22. http://simile.mit.edu/exhibit/
23. http://www.w3.org/2007/02/15-hcls-minutes.html#action07
24. http://www.w3.org/2007/02/15-hcls-minutes.html#action08
25. http://www.w3.org/2007/02/15-hcls-minutes.html#action07
26. http://www.w3.org/2007/02/15-hcls-minutes.html#action03
27. http://www.w3.org/2007/02/15-hcls-minutes.html#action04
28. http://www.w3.org/2007/02/15-hcls-minutes.html#action06
29. http://www.w3.org/2007/02/15-hcls-minutes.html#action08
30. http://www.w3.org/2007/02/15-hcls-minutes.html#action02
31. http://www.w3.org/2007/02/15-hcls-minutes.html#action05
32. http://www.w3.org/2007/02/15-hcls-minutes.html#action01
33. http://dev.w3.org/cvsweb/~checkout~/2002/scribe/scribedoc.htm
34. http://dev.w3.org/cvsweb/2002/scribe/
--
-eric
office: +1.617.258.5741 NE43-344, MIT, Cambridge, MA 02144 USA
cell: +1.857.222.5741
(eric@w3.org)
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Received on Thursday, 15 February 2007 17:30:12 UTC