- From: Chimezie Ogbuji <ogbujic@bio.ri.ccf.org>
- Date: Thu, 26 Oct 2006 11:26:10 -0400 (EDT)
- To: Eric Neumann <eneumann@teranode.com>
- cc: Alan Ruttenberg <alanruttenberg@gmail.com>, W3C HCLSIG <public-semweb-lifesci@w3.org>
I'm not 100% certain the action item is related to this, but during the
F2F I had asked the Interest Group for opinions on the various
ways of modelling 'controlled values' for a property:
- as a closed set of literals
- as an enumerated class (nominals / owl:oneOf)
- as a class constructed by union (disjunction / owl:unionOf).
It was in the context of the bypass surgery usecase [1] and how you might
model a controlled list of vessels.
The example was 'Coronary Artery stenosis is a class of heart disease
associated with one of many coronary vessels - each of which with a specific anatomical location':
Class(CoronaryArteryStenosis complete
intersectionOf(
...
restriction(associatedArtery allValuesFrom CoronaryArtery)
)
)
I. Nominals (where each vessel is an individual and an instance of
CoronaryArtery)
Class(CoronaryArtery complete
oneOf(
LeftAnteriorDescending
RightCoronaryArtery
LeftCircumflex
....
)
)
II. Disjunction - where each vessel is an instance of the unique kinds of
Coronary Arteries
Class(CoronaryArtery complete
unionOf(
LeftAnteriorDescending
RightCoronaryArtery
LeftCircumflex
....
)
)
The former is more amenable for expressing & reusing controlled / coded
vocabularies (such as HL7 for instance) and easier to implement visually
as a pick list (for data collection purposes), the latter allows you more
flexibility to use foundational ontologies such as FMA [2]
to be precise about the anatomical relationships and descriptors.
However, what you gain in a more precise description, you lose (may?) in
uniformity.
[1] http://esw.w3.org/topic/HCLS/F2F/Slides?action=AttachFile&do=get&target=CABGIndicationSlides.zip
[2] http://sig.biostr.washington.edu/projects/fm/
Chimezie Ogbuji
Lead Systems Analyst
Thoracic and Cardiovascular Surgery
Cleveland Clinic Foundation
9500 Euclid Avenue/ W26
Cleveland, Ohio 44195
Office: (216)444-8593
ogbujic@ccf.org
Received on Thursday, 26 October 2006 15:26:59 UTC