- From: Brian Gilman <gilmanb@mac.com>
- Date: Tue, 21 Feb 2006 11:55:49 -0500
- To: "Kashyap, Vipul" <VKASHYAP1@PARTNERS.ORG>
- Cc: Alfredo Morales <Alfredo.Morales@cerebra.com>, public-semweb-lifesci <public-semweb-lifesci@w3.org>
Yep, The dates/times are available. Just let me know the final time so I can request it. Best, -B -- Brian Gilman President Panther Informatics Inc. E-Mail: gilmanb@pantherinformatics.com gilmanb@jforge.net AIM: gilmanb1 01000010 01101001 01101111 01001001 01101110 01100110 01101111 01110010 01101101 01100001 01110100 01101001 01100011 01101001 01100001 01101110 On Feb 21, 2006, at 11:45 AM, Kashyap, Vipul wrote: > > As per current constraints put forth by the respondents, the two > likely days > that are emerging are Tuesdays and Wednesdays... > > Will get back to you on that asap... > > In the meanwhile, just wanted to make sure that Tuesdays and > Wednesdays 11:00am > - 12:00pm are available.. > > Thanks, > > ---Vipul > > ======================================= > Vipul Kashyap, Ph.D. > Senior Medical Informatician > Clinical Informatics R&D, Partners HealthCare System > Phone: (781)416-9254 > Cell: (617)943-7120 > http://www.partners.org/cird/staff.asp?stAb=vik > > To keep up you need the right answers; to get ahead you need the > right questions > > ---John Browning and Spencer Reiss, Wired 6.04.95 > >> -----Original Message----- >> From: Brian Gilman [mailto:gilmanb@mac.com] >> Sent: Tuesday, February 21, 2006 10:42 AM >> To: Alfredo Morales >> Cc: Kashyap, Vipul; public-semweb-lifesci >> Subject: Re: [OWG] Telecon >> >> Hello Guys, >> >> Was there a resolution on the date(s) time(s) for this conference >> call? >> >> -B >> -- >> Brian Gilman >> President Panther Informatics Inc. >> E-Mail: gilmanb@pantherinformatics.com >> gilmanb@jforge.net >> AIM: gilmanb1 >> >> 01000010 01101001 01101111 >> 01001001 01101110 01100110 >> 01101111 01110010 01101101 >> 01100001 01110100 01101001 >> 01100011 01101001 01100001 >> 01101110 >> >> >> >> On Feb 21, 2006, at 8:53 AM, Alfredo Morales wrote: >> >>> >>> Earlier in the week would work better for me (Monday or Tuesday) - >>> rest >>> of the week seems to be unpredictable most of the times. 11:00am EST >>> will work in the immediate future. >>> >>> -----Original Message----- >>> From: Kashyap, Vipul [mailto:VKASHYAP1@PARTNERS.ORG] >>> Sent: Monday, February 20, 2006 12:04 PM >>> To: public-semweb-lifesci >>> Cc: John Madden; Vinay K. Chaudhri; wangxiao@musc.edu; >>> duncan.hull@cs.man.ac.uk; Robert Stevens; Amit Sheth @ LSDIS; >>> Alfredo >>> Morales; Ullman-Cullere, Mollie; ray.hookway@hp.com; Mark Musen; >>> Susie >>> Stephens; helen.chen@agfa.com; Alan Rector >>> Subject: [OWG] Telecon >>> >>> >>> Hi, >>> >>> Would like to schedule a teleconference to discuss the project plan >>> and >>> short term/long term deliverables. >>> >>> Would like to schedule it initially as a weekly call for an hour >>> around >>> 11am Eastern (as this works very well for people on the West >>> Coast and >>> Europe) so that we can make rapid progress. As things get finalized >>> and >>> stable, we can then reduce the frequency of the calls. >>> >>> Please let me know the days which will work for you guys (Tuesday - >>> Friday). >>> >>> Thanks and Regards, >>> >>> ---Vipul >>> >>>> -----Original Message----- >>>> From: Kashyap, Vipul >>>> Sent: Monday, February 13, 2006 5:53 PM >>>> To: 'public-semweb-lifesci' >>>> Cc: 'John Madden'; 'Vinay K. Chaudhri'; 'wangxiao@musc.edu'; >>>> 'duncan.hull@cs.man.ac.uk'; 'Robert Stevens'; 'Amit Sheth @ LSDIS'; >>>> 'Alfredo Morales'; Ullman-Cullere, Mollie; 'ray.hookway@hp.com'; >>>> 'Mark >>> >>>> Musen'; 'Susie Stephens'; 'helen.chen@agfa.com'; 'Alan Rector'; >>>> Kashyap, Vipul >>>> Subject: RE: Ontology Working Group Proposal Draft >>>> >>>> >>>> Hi, >>>> >>>> A revised version of the Ontology Task Force Proposal is attached >>>> with >>> >>>> this proposal. A list of proposed tasks with proposed task >>>> coordinators is as follows. Please let me know if you would rather >>> coordinate other tasks. >>>> These is just an initial proposal and I have tried to accommodate >>>> everyone! >>>> Collaborators of other collaborating task groups have also been >>>> identified. >>>> >>>> 1. Use Cases Document (3 months): >>>> Task Coordinators: Vipul Kashyap, Mollie Ullman-Cullere >>>> Collaborating Task Coordinators: Susie Stephens?, Helen Chen? >>>> >>>> 2. Ontology Definitions and Best Practices White Paper (1 year): >>>> Task Coordinators: Alfredo Morales, Wangxiao, Robert Stevens >>>> Collaborating Task Coordinators: Alan Rector?, Helen Chen >>>> >>>> 3. Ontology Access and Usage Best Practices Report (6 months): >>>> Task Coordinators: Duncan Hall, Ray Hookaway >>>> Collaborating Task Coordinators: Mark Musen?, Susie Stephens?, >>>> Helen Chen? >>>> >>>> 4. Creation of Wikis for Collaborative Ontology Development (6 >>> months): >>>> Task Coordinators: John Madden, Wangxiao >>>> Collaborating Task Coordinators: Mark Musen? >>>> >>>> 5. Ontology Maintenance Report (18 months): >>>> Task Coordinators: Mark Musen >>>> Collaborating Task Coordinators: Vinay Chaudhri, Alan Rector >>>> >>>> 6. Ontology Evaluation Report (18 months): >>>> Task Coordinators: Mark Musen >>>> Collaborating Task Coordinators: Amit Sheth, Alan Rector? >>>> >>>> 7. Use Case Solution Design (2 years): >>>> Task Coordinators: Vipul Kashyap, John Madden, Alfredo Morales >>>> Collaborating Task Coordinators: Susie Stephens? >>>> >>>> Please let me have your comments, feedback and suggestions on the >>>> task >>> >>>> breakdown and assignments. >>>> >>>> We also need to have our own teleconference, maybe the week after >>>> February 20th, say February 27th. Let me know if that day works for >>> you guys. >>>> >>>> Cheers, >>>> >>>> ---Vipul >>>> >>>>> -----Original Message----- >>>>> From: Miller, Michael D (Rosetta) >>>>> [mailto:Michael_Miller@Rosettabio.com] >>>>> Sent: Friday, February 03, 2006 6:13 PM >>>>> To: Kashyap, Vipul; public-semweb-lifesci >>>>> Cc: John Madden; Vinay K. Chaudhri; wangxiao@musc.edu; >>>>> duncan.hull@cs.man.ac.uk; Robert Stevens; Amit Sheth @ LSDIS; >>>>> Alfredo Morales; Ullman-Cullere, Mollie; ray.hookway@hp.com; Mark >>>>> Musen >>>>> Subject: RE: Ontology Working Group Proposal Draft >>>>> >>>>> Hi All, >>>>> >>>>> Overall, it looks like a nice formulation. I especially like the >>>>> emphasis in practical usage. >>>>> >>>>> For point 2, there is an additional class of ontologies for >>>>> annotating life science studies/investigations/experiments for >>>>> purposes of publication and reproducibility. >>>>> >>>>> For microarray experiments, several major scientific journals, >>>>> including the Nature group, The Lancet, Cell and EMBO journal >>>>> adopted MIAME recommendations and submission of the experiment >>>>> to a >>>>> repository (GEO or >>>>> ArrayExpress) as a requirement for publication of microarray >>>>> experiments. >>>>> >>>>> MAGE-OM and MAGE-ML, the OMG Gene Expression specification >>>>> (http://www.omg.org/technology/documents/formal/ >>>>> gene_expression.htm) >>>>> , were developed as a format for describing a microarray >>>>> experiment >>>>> and the MGED Ontology >>>>> (http://mged.sourceforge.net/ontologies/index.php) was >>>>> developed for >>> >>>>> use in annotating MAGE-ML documents. It is actually getting >>>>> used a >>>>> great deal. >>>>> >>>>> There is a follow-up effort, FuGE-OM and FuGE-ML (functional >>>>> genomic >>>>> experiments) that is currently being developed, to broaden the >>>>> base >>>>> to proteomics, genotyping, various -omics, etc. which is also >>>>> having >>> >>>>> a similar ontology developed. >>>>> >>>>> cheers, >>>>> Michael >>>>> >>>>> Michael Miller >>>>> Lead Software Developer >>>>> Rosetta Biosoftware Business Unit >>>>> www.rosettabio.com >>>>> >>>>> >>>>>> -----Original Message----- >>>>>> From: public-semweb-lifesci-request@w3.org >>>>>> [mailto:public-semweb-lifesci-request@w3.org] On Behalf Of >>>>>> Kashyap, Vipul >>>>>> Sent: Friday, February 03, 2006 2:27 PM >>>>>> To: public-semweb-lifesci >>>>>> Cc: John Madden; Vinay K. Chaudhri; wangxiao@musc.edu; >>>>>> duncan.hull@cs.man.ac.uk; Robert Stevens; Amit Sheth @ LSDIS; >>>>>> Alfredo Morales; Ullman-Cullere, Mollie; ray.hookway@hp.com; >>>>>> Kashyap, Vipul; Mark Musen >>>>>> Subject: Ontology Working Group Proposal Draft >>>>>> >>>>>> >>>>>> >>>>>> Hi, >>>>>> >>>>>> The draft proposal for the Ontology Working Sub-Group is attached >>>>>> with this e-mail. >>>>>> >>>>>> I recognize that this might need to be scoped down a little bit. >>>>>> Have tried to identify collaboration points with the other >>>>>> sub-groups. The proposal identifies "lead" parties for each of >>>>>> the >>> >>>>>> deliverables. >>>>>> >>>>>> This is a draft and any feedback and suggestions are most >>>>>> welcome. >>>>>> >>>>>> Cheers, >>>>>> >>>>>> ---Vipul >>>>>> >>>>>> ======================================= >>>>>> Vipul Kashyap, Ph.D. >>>>>> Senior Medical Informatician >>>>>> Clinical Informatics R&D, Partners HealthCare System >>>>>> Phone: (781)416-9254 >>>>>> Cell: (617)943-7120 >>>>>> http://www.partners.org/cird/staff.asp?stAb=vik >>>>>> >>>>>> To keep up you need the right answers; to get ahead you need the >>>>>> right questions ---John Browning and Spencer Reiss, Wired 6.04.95 >>>>>> >>>>>>> -----Original Message----- >>>>>>> From: public-semweb-lifesci-request@w3.org >>>>>> [mailto:public-semweb-lifesci- >>>>>>> request@w3.org] >>>>>>> Sent: Wednesday, August 11, 2004 10:35 AM >>>>>>> To: Kashyap, Vipul >>>>>>> Subject: Re: subscribe >>>>>>> >>>>>>> You have added to the subscriber list of: >>>>>>> >>>>>>> public-semweb-lifesci@w3.org >>>>>>> >>>>>>> the following mail address: >>>>>>> >>>>>>> vkashyap1@partners.org >>>>>>> >>>>>>> By default, copies of your own submissions will be returned. >>>>>>> >>>>>>> This is an automated subscription mechanism. For your >>>>>> verification, a >>>>>>> transcript of the original subscription request is included >>> below. >>>>>>> >>>>>>> If the wrong address has been subscribed and you seem to be >>>>>> unable to fix >>>>>>> it >>>>>>> yourself, reply to this message now (quoting it entirely >>>>>> (for diagnostic >>>>>>> purposes), and of course adding any comments you see fit). >>>>>>> >>>>>>> -- >>>>>>>> From VKASHYAP1@PARTNERS.ORG Wed Aug 11 14:34:41 2004 >>>>>>>> Received: from dr-nick.w3.org ([18.29.1.73]) >>>>>>>> by frink.w3.org with esmtp (Exim 4.34) >>>>>>>> id 1BuuBd-0000Az-F9 >>>>>>>> for public-semweb-lifesci-request@listhub.w3.org; Wed, >>>>>> 11 Aug 2004 >>>>>>> 14:34:41 +0000 >>>>>>>> Received: from phsxchici3.mgh.harvard.edu ([132.183.130.38] >>>>>>> helo=PHSXCHICI3.partners.org) >>>>>>>> by dr-nick.w3.org with esmtp (Exim 4.32) >>>>>>>> id 1BuuBd-0008Gk-Br >>>>>>>> for public-semweb-lifesci-request@w3.org; Wed, 11 Aug >>>>>> 2004 10:34:41 >>>>>>> -0400 >>>>>>>> Received: by phsxchici3.mgh.harvard.edu with Internet Mail >>>>>>>> Service >>>>>>> (5.5.2657.72) >>>>>>>> id <QWPAMSV5>; Wed, 11 Aug 2004 10:34:59 -0400 >>>>>>>> Message-ID: >>>>>>> <8439A208B822D311B4DD0008C7EAAA0B1391905F@phsexch12.partners.org >>>>>>>> >>>>>>>> From: "Kashyap, Vipul" <VKASHYAP1@PARTNERS.ORG> >>>>>>>> To: public-semweb-lifesci-request@w3.org >>>>>>>> Subject: subscribe >>>>>>>> Date: Wed, 11 Aug 2004 10:34:01 -0400 >>>>>>>> MIME-Version: 1.0 >>>>>>>> X-Mailer: Internet Mail Service (5.5.2657.72) >>>>>>>> Content-Type: multipart/alternative; >>>>>>>> boundary="----_=_NextPart_001_01C47FB0.3ED56C84" >>>>>>>> >>>>>>>> This message is in MIME format. Since your mail reader does not >>>>>>> understand >>>>>>>> this format, some or all of this message may not be legible. >>>>>>>> >>>>>>>> ------_=_NextPart_001_01C47FB0.3ED56C84 >>>>>>>> Content-Type: text/plain >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> ==================================================== >>>>>>>> >>>>>>>> Vipul Kashyap, PhD >>>>>>>> >>>>>>>> Senior Medical Informatician, Clinical Knowledge Management >>>>>>>> >>>>>>>> Partners HealthCare Systems, Clinical Informatics R&D >>>>>>>> >>>>>>>> Work: (781)416-9254 >>>>>>>> >>>>>>>> Mobile: (617)943-7120 >>>>>>>> >>>>>>>> Fax: (781)416-8913 >>>>>>>> >>>>>>>> Email: vkashyap1@partners.org <mailto:vkashyap1@partners.org> >>>>>>>> >>>>>>>> Web: http://www.partners.org/cird/staff.asp?stAb=vik >>>>>>>> <http://www.partners.org/cird/staff.asp?stAb=vik> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> ------_=_NextPart_001_01C47FB0.3ED56C84 >>>>>>>> Content-Type: text/html >>>>>>>> Content-Transfer-Encoding: quoted-printable >>>>>>>> >>>>>>>> <html xmlns:v=3D"urn:schemas-microsoft-com:vml" = >>>>>>>> xmlns:o=3D"urn:schemas-microsoft-com:office:office" = >>>>>>>> xmlns:w=3D"urn:schemas-microsoft-com:office:word" = >>>>>>>> xmlns:st1=3D"urn:schemas-microsoft-com:office:smarttags" = >>>>>>>> xmlns=3D"http://www.w3.org/TR/REC-html40"> >>>>>>>> >>>>>>>> <head> >>>>>>>> <META HTTP-EQUIV=3D"Content-Type" CONTENT=3D"text/html; = >>>>>>>> charset=3DUS-ASCII"> >>>>>>>> >>>>>>>> >>>>>>>> <meta name=3DGenerator content=3D"Microsoft Word 11 >>>>>> (filtered medium)"> >>>>>>>> <o:SmartTagType = >>>>>>>> namespaceuri=3D"urn:schemas-microsoft-com:office:smarttags" >>>>>>>> name=3D"City"/> >>>>>>>> <o:SmartTagType = >>>>>>>> namespaceuri=3D"urn:schemas-microsoft-com:office:smarttags" >>>>>>>> name=3D"place"/> >>>>>>>> <!--[if !mso]> >>>>>>>> <style> >>>>>>>> st1\:*{behavior:url(#default#ieooui) } </style> <![endif]--> >>>>>>>> <style> >>>>>>>> <!-- >>>>>>>> /* Font Definitions */ >>>>>>>> @font-face >>>>>>>> {font-family:"Bookman Old Style"; >>>>>>>> panose-1:2 5 6 4 5 5 5 2 2 4;} >>>>>>>> /* Style Definitions */ >>>>>>>> p.MsoNormal, li.MsoNormal, div.MsoNormal >>>>>>>> {margin:0in; >>>>>>>> margin-bottom:.0001pt; >>>>>>>> font-size:12.0pt; >>>>>>>> font-family:"Times New Roman";} a:link, >>> span.MsoHyperlink >>>>>>>> {color:blue; >>>>>>>> text-decoration:underline;} >>>>>>>> a:visited, span.MsoHyperlinkFollowed >>>>>>>> {color:purple; >>>>>>>> text-decoration:underline;} >>>>>>>> span.EmailStyle17 >>>>>>>> {mso-style-type:personal-compose; >>>>>>>> font-family:Arial; >>>>>>>> color:windowtext;} >>>>>>>> @page Section1 >>>>>>>> {size:8.5in 11.0in; >>>>>>>> margin:1.0in 1.25in 1.0in 1.25in;} >>>>>>>> div.Section1 >>>>>>>> {page:Section1;} >>>>>>>> --> >>>>>>>> </style> >>>>>>>> <!--[if gte mso 9]><xml> >>>>>>>> <o:shapedefaults v:ext=3D"edit" spidmax=3D"1026" /> >>>>>>>> </xml><![endif]--><!--[if gte mso 9]><xml> <o:shapelayout >>>>>>>> v:ext=3D"edit"> >>>>>>>> <o:idmap v:ext=3D"edit" data=3D"1" /> >>>>>>>> </o:shapelayout></xml><![endif]--> >>>>>>>> </head> >>>>>>>> >>>>>>>> <body lang=3DEN-US link=3Dblue vlink=3Dpurple> >>>>>>>> >>>>>>>> <div class=3DSection1> >>>>>>>> >>>>>>>> <p class=3DMsoNormal><font size=3D2 face=3DArial><span = >>>>>>>> style=3D'font-size:10.0pt; >>>>>>>> font-family:Arial'><o:p> </o:p></span></font></p> >>>>>>>> >>>>>>>> <p class=3DMsoNormal><font size=3D2 face=3DArial><span = >>>>>>>> style=3D'font-size:10.0pt; >>>>>>>> font-family:Arial'><o:p> </o:p></span></font></p> >>>>>>>> >>>>>>>> <p class=3DMsoNormal><font size=3D2 face=3D"Times New >>>>>> Roman"><span = >>>>>>>> style=3D'font-size: >>>>>>> >>>>>>> 10.0pt'>=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3 >>>>>> D=3D=3D=3D=3 >>>>>>> D= >>>>>>> >>>>>>> =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= >>>>>> 3D=3D=3D=3D= >>>>>>>> =3D=3D=3D=3D=3D=3D<o:p></o:p></span></font></p> >>>>>>>> >>>>>>>> <p class=3DMsoNormal><font size=3D2 face=3D"Times New >>>>>> Roman"><span = >>>>>>>> style=3D'font-size: >>>>>>>> 10.0pt'>Vipul Kashyap, PhD<o:p></o:p></span></font></p> >>>>>>>> >>>>>>>> <p class=3DMsoNormal><font size=3D2 face=3D"Times New >>>>>> Roman"><span = >>>>>>>> style=3D'font-size: >>>>>>>> 10.0pt'>Senior Medical Informatician, Clinical Knowledge = >>>>>>>> Management<o:p></o:p></span></font></p> >>>>>>>> >>>>>>>> <p class=3DMsoNormal><font size=3D2 face=3D"Times New >>>>>> Roman"><span = >>>>>>>> style=3D'font-size: >>>>>>>> 10.0pt'>Partners HealthCare Systems, Clinical Informatics = >>>>>>>> R&D<o:p></o:p></span></font></p> >>>>>>>> >>>>>>>> <p class=3DMsoNormal><font size=3D2 face=3D"Times New >>>>>> Roman"><span = >>>>>>>> style=3D'font-size: >>>>>>>> 10.0pt'>Work: (781)416-9254<o:p></o:p></span></font></p> >>>>>>>> >>>>>>>> <p class=3DMsoNormal><st1:place w:st=3D"on"><st1:City >>>>>> w:st=3D"on"><font = >>>>>>>> size=3D2 >>>>>>>> face=3D"Times New Roman"><span = >>>>>>> >>>>>>> style=3D'font-size:10.0pt'>Mobile</span></font></st1:City></s >>>>>> t1:place><f= >>>>>>>> ont >>>>>>>> size=3D2><span style=3D'font-size:10.0pt'>: = >>>>>>>> (617)943-7120<o:p></o:p></span></font></p> >>>>>>>> >>>>>>>> <p class=3DMsoNormal><font size=3D2 face=3D"Times New >>>>>> Roman"><span = >>>>>>>> style=3D'font-size: >>>>>>>> 10.0pt'>Fax: (781)416-8913</span></font><o:p></o:p></p> >>>>>>>> >>>>>>>> <p class=3DMsoNormal><font size=3D2 face=3D"Times New >>>>>> Roman"><span = >>>>>>>> style=3D'font-size: >>>>>>>> 10.0pt'>Email: <a = >>>>>>>> href=3D"mailto:vkashyap1@partners.org">vkashyap1@partners.org</ >>>>>>>> a> >>>>>>>> </span></font><o:p></o:p></p> >>>>>>>> >>>>>>>> <p class=3DMsoNormal><font size=3D2 face=3D"Times New >>>>>> Roman"><span = >>>>>>>> style=3D'font-size: >>>>>>>> 10.0pt'>Web: <a = >>>>>>> >>>>>>> href=3D"http://www.partners.org/cird/staff.asp?stAb=3Dvik">ht >>>>>> tp://www.pa= >>>>>>>> rtners.org/cird/staff.asp?stAb=3Dvik</a> >>>>>>>> </span></font><font size=3D2 face=3D"Bookman Old Style"><span = >>>>>>>> style=3D'font-size: >>>>>>>> 10.0pt;font-family:"Bookman Old >>>>>>>> Style"'> </span></font><font = size=3D2><span >>>>>>>> style=3D'font-size:10.0pt'><o:p></o:p></span></font></p> >>>>>>>> >>>>>>>> <p class=3DMsoNormal><font size=3D3 face=3D"Times New >>>>>> Roman"><span = >>>>>>>> style=3D'font-size: >>>>>>>> 12.0pt'><o:p> </o:p></span></font></p> >>>>>>>> >>>>>>>> </div> >>>>>>>> >>>>>>>> </body> >>>>>>>> >>>>>>>> </html> >>>>>>>> >>>>>>>> ------_=_NextPart_001_01C47FB0.3ED56C84-- >>>>>>>> >>>>>> >>> >>> >
Received on Tuesday, 21 February 2006 16:56:03 UTC