- From: John Wilbanks <wilbanks@w3.org>
- Date: Mon, 16 Aug 2004 15:41:36 -0400
- To: public-semweb-lifesci@w3.org
All, After surveying many of the folks here at W3C on how to best represent binary content and XPath-style querying in RDF... So to the first question re: pointing to side chains using Xpath and doing similar work in RDF...if the CML spec has semantics (either explicitly described, or described by you) about which elements are side chains, then you should be able to take an xpath approach to those documents as you described. However, as XPath does its business by connecting to the *structure* of the XML parse tree, and RDF is fundamentally structured differently, it would be interesting to port the xquery language into RDF. The RDF Query group has asked for input into the utility of trying to do this, and I encourage all of you to think about such utility on this list. One point: it's very helpful that the semantics be explicit - the object to which the xpath refers is a side chain, not a piece of an xml parse tree. I mention a tool below called GRDDL that helps extract some semantics from XML. Now, how would we actually go about this in RDF? I would point everyone to Eric Prud'hommeaux's work on SQL-RDF interaction and representation, especially his paper at http://www.w3.org/2004/04/30-RDF-RDB-access/ which covers optimzed RDF access to relational databases, as well as a tool called Gleaning Resource Descriptions from Dialects of Languages or "GRDDL" (http://www.w3.org/2004/01/rdxh/spec) that takes "colloquial" XML (community-generated markup lang), runs it through XSLT and spits out RDF. If you take the paper's approach and the GRDDL tools you can do some quick RDF/OWL representation of relational data and domain semantics without a lot of overhead. I've got some example code that Eric has ginned up here (please be forgiving on details, we're not bioinformaticists quite yet!) that I'll post in a separate mail. jtw -- John Wilbanks W3C Fellow Semantic Web - Life Sciences http://www.w3.org/People/all#wilbanks wilbanks@w3.org 617-253-5845 (direct) 617-838-6333 (mobile; best voicemail #) --
Received on Monday, 16 August 2004 19:41:07 UTC