Re: Loading prov in Protege

I think the thing is the concatenation - protege doesn't seem to like
duplicate terms.

Paul


On Thu, May 2, 2013 at 5:22 PM, Daniel Garijo <
dgarijo@delicias.dia.fi.upm.es> wrote:

>   Hi Tim.
>  I get the same error. Before I didn't get it.
>  I have checked and I uploaded the prov-dc ontology in mercurial,
>  and everything is declared as it is in PROV-dictionary:
>
> https://dvcs.w3.org/hg/prov/raw-file/ec6859fefebf/namespace/prov-dc.owl
>
>  ^That link loads ok in Protege.
>
>  Do I have to change anything?
>  Best,
> Daniel
>
>
> 2013/5/2 Timothy Lebo <lebot@rpi.edu>
>
>> prov-wg,
>>
>> Has anyone had success loading http://www.w3.org/ns/prov in Protege?
>>
>> I receive the following two messages that might arise from the "namespace
>> concatenation" that I did recently.
>>
>> Any thoughts?
>>
>> Thanks,
>> Tim
>>
>>
>>
>> == Resolve missing import? ==
>> The system could not locate the ontology:
>> http://www.w3.org/ns/prov-dc#
>>
>>
>>
>> == Second error ==
>>
>> Ontology already exists. <http://www.w3.org/ns/prov#>
>>
>>
>> Full Stack Trace
>>
>> -----------------------------------------------------------------------------------------
>>
>> org.semanticweb.owlapi.model.OWLOntologyAlreadyExistsException: Ontology
>> already exists. <http://www.w3.org/ns/prov#>
>>         at
>> uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.loadOntology(OWLOntologyManagerImpl.java:628)
>>         at
>> uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.loadOntology(OWLOntologyManagerImpl.java:564)
>>         at
>> uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.loadImports(OWLOntologyManagerImpl.java:975)
>>         at
>> uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.makeLoadImportRequest(OWLOntologyManagerImpl.java:996)
>>         at
>> org.coode.owlapi.rdfxml.parser.TPImportsHandler.handleTriple(TPImportsHandler.java:79)
>>         at
>> org.coode.owlapi.rdfxml.parser.OWLRDFConsumer.handleStreaming(OWLRDFConsumer.java:1436)
>>         at
>> org.coode.owlapi.rdfxml.parser.OWLRDFConsumer.statementWithResourceValue(OWLRDFConsumer.java:1395)
>>         at
>> org.semanticweb.owlapi.rdf.syntax.RDFParser.statementWithResourceValue(RDFParser.java:538)
>>         at
>> org.semanticweb.owlapi.rdf.syntax.RDFParser$EmptyPropertyElement.startElement(RDFParser.java:992)
>>         at
>> org.semanticweb.owlapi.rdf.syntax.RDFParser$PropertyElementList.startElement(RDFParser.java:876)
>>         at
>> org.semanticweb.owlapi.rdf.syntax.RDFParser.startElement(RDFParser.java:247)
>>         at
>> org.coode.owlapi.rdfxml.parser.RDFXMLParser$1.startElement(RDFXMLParser.java:62)
>>         at
>> com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(AbstractSAXParser.java:501)
>>         at
>> com.sun.org.apache.xerces.internal.parsers.AbstractXMLDocumentParser.emptyElement(AbstractXMLDocumentParser.java:179)
>>         at
>> com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.scanStartElement(XMLNSDocumentScannerImpl.java:377)
>>         at
>> com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(XMLDocumentFragmentScannerImpl.java:2756)
>>         at
>> com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:647)
>>         at
>> com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.next(XMLNSDocumentScannerImpl.java:140)
>>         at
>> com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:511)
>>         at
>> com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:808)
>>         at
>> com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:737)
>>         at
>> com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:119)
>>         at
>> com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:1205)
>>         at
>> com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(SAXParserImpl.java:522)
>>         at javax.xml.parsers.SAXParser.parse(SAXParser.java:395)
>>         at
>> org.semanticweb.owlapi.rdf.syntax.RDFParser.parse(RDFParser.java:146)
>>         at
>> org.coode.owlapi.rdfxml.parser.RDFXMLParser.parse(RDFXMLParser.java:90)
>>         at
>> uk.ac.manchester.cs.owl.owlapi.ParsableOWLOntologyFactory.loadOWLOntology(ParsableOWLOntologyFactory.java:165)
>>         at
>> uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.loadOntology(OWLOntologyManagerImpl.java:619)
>>         at
>> uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.loadOntologyFromOntologyDocument(OWLOntologyManagerImpl.java:580)
>>         at
>> org.protege.editor.owl.model.OWLModelManagerImpl.loadOntologyFromPhysicalURI(OWLModelManagerImpl.java:318)
>>         at
>> org.protege.editor.owl.OWLEditorKit.handleLoadFrom(OWLEditorKit.java:179)
>>         at
>> org.protege.editor.core.ProtegeManager.loadAndSetupEditorKitFromURI(ProtegeManager.java:179)
>>         at
>> org.protege.editor.core.ProtegeWelcomeFrame$ProtegeWelcomePanel.handleOpenFromURI(ProtegeWelcomeFrame.java:188)
>>         at
>> org.protege.editor.core.ProtegeWelcomeFrame$ProtegeWelcomePanel.access$000(ProtegeWelcomeFrame.java:71)
>>         at
>> org.protege.editor.core.ProtegeWelcomeFrame$ProtegeWelcomePanel$3.actionPerformed(ProtegeWelcomeFrame.java:146)
>>         at
>> org.protege.editor.core.ui.util.LinkLabel.activateLink(LinkLabel.java:102)
>>         at
>> org.protege.editor.core.ui.util.LinkLabel.access$100(LinkLabel.java:30)
>>         at
>> org.protege.editor.core.ui.util.LinkLabel$1.mouseReleased(LinkLabel.java:68)
>>         at java.awt.Component.processMouseEvent(Component.java:6382)
>>         at javax.swing.JComponent.processMouseEvent(JComponent.java:3275)
>>         at java.awt.Component.processEvent(Component.java:6147)
>>         at java.awt.Container.processEvent(Container.java:2083)
>>         at java.awt.Component.dispatchEventImpl(Component.java:4744)
>>         at java.awt.Container.dispatchEventImpl(Container.java:2141)
>>         at java.awt.Component.dispatchEvent(Component.java:4572)
>>         at
>> java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4619)
>>         at
>> java.awt.LightweightDispatcher.processMouseEvent(Container.java:4280)
>>         at
>> java.awt.LightweightDispatcher.dispatchEvent(Container.java:4210)
>>         at java.awt.Container.dispatchEventImpl(Container.java:2127)
>>         at java.awt.Window.dispatchEventImpl(Window.java:2489)
>>         at java.awt.Component.dispatchEvent(Component.java:4572)
>>         at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:710)
>>         at java.awt.EventQueue.access$400(EventQueue.java:82)
>>         at java.awt.EventQueue$2.run(EventQueue.java:669)
>>         at java.awt.EventQueue$2.run(EventQueue.java:667)
>>         at java.security.AccessController.doPrivileged(Native Method)
>>         at
>> java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
>>         at
>> java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
>>         at java.awt.EventQueue$3.run(EventQueue.java:683)
>>         at java.awt.EventQueue$3.run(EventQueue.java:681)
>>         at java.security.AccessController.doPrivileged(Native Method)
>>         at
>> java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
>>         at java.awt.EventQueue.dispatchEvent(EventQueue.java:680)
>>         at
>> java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
>>         at
>> java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
>>         at
>> java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
>>         at
>> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
>>         at
>> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
>>         at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
>>
>>
>>
>


-- 
-----------------------------------------------------------------------------------
Dr. Paul Groth (p.t.groth@vu.nl)
http://www.few.vu.nl/~pgroth/
Assistant Professor
- Web & Media Group | Department of Computer Science
- The Network Institute
VU University Amsterdam

Received on Saturday, 4 May 2013 13:34:47 UTC