- From: WBS Mailer on behalf of satya.sahoo@case.edu <webmaster@w3.org>
- Date: Sun, 27 Jan 2013 00:36:02 +0000
- To: satya.sahoo@case.edu,zednis@rpi.edu,public-prov-comments@w3.org
The following answers have been successfully submitted to 'W3C PROV Vocabulary Extension Survey' (Provenance Working Group) for Satya Sahoo. --------------------------------- Vocabulary Extension Information ---- Please provide the name and url of the vocabulary, ontology or other extension to PROV. Name: Systems molecular biology provenance ontology (SysPro) URL: http://physiomimi.case.edu/sempod/index.php/Main_PageDescription: The Systems molecular biology provenance ontology (SysPro) is used in the Semantic Proteomics Dashboard (SemPoD) to enable researchers at the Case Center for Proteomics and Bioinformatics (CPB) to query proteomics data across projects and allow integration with legacy data. SysPro models provenance metadata together with domain information, also called semantic provenance, to support multiple query functionalities in an intuitive query interface. The SysPro ontology extends the PROV-ontology (PROV-O) and re-uses terms from existing proteomics standards, such as the minimum information required for reporting a molecular interaction experiment (MIMIx), and the minimum information about a proteomics experiment (MIAPE). Further information at: http://physiomimi.case.edu/sempod/index.php/Main_Page --------------------------------- Contact Information ---- Name: Catherine Jayapandian, Satya SahooEmail: sempodcwru@googlegroups.com --------------------------------- PROV Encodings Supported ---- Choose all that apply * [x] PROV-O * [ ] PROV-N * [ ] PROV-XML Please list any additional supported encodings (e.g. PROV-JSON, PROV-CSV, etc.) in the free-text area below: None --------------------------------- Feature Coverage ---- Indicate covered features by selecting one of the following below: * 1) I Don't Know * 2) Used Directly * 3) Extended * Entity: [ 3 +++ (highest) ] * Activity: [ 3 +++ (highest) ] * Agent: [ 3 +++ (highest) ] * Generation: [ 2 ++ ] * Usage: [ 2 ++ ] * Communication: [ No opinion ] * Derivation: [ No opinion ] * Attribution: [ No opinion ] * Association: [ No opinion ] * Delegation: [ No opinion ] * Start: [ 2 ++ ] * End: [ 2 ++ ] * Invalidation: [ No opinion ] * Revision: [ No opinion ] * Quotation: [ No opinion ] * PrimarySource: [ No opinion ] * Person: [ 2 ++ ] * Organization: [ No opinion ] * SoftwareAgent: [ 2 ++ ] * Plan: [ 2 ++ ] * Influence: [ No opinion ] * Bundle: [ No opinion ] * Specialization: [ No opinion ] * Alternate: [ No opinion ] * Collection: [ No opinion ] * EmptyCollection: [ No opinion ] * Membership: [ No opinion ] * Identifier: [ No opinion ] * Attributes: [ No opinion ] * Label: [ No opinion ] * Location : [ 2 ++ ] * Role: [ 3 +++ (highest) ] * Type: [ No opinion ] * Value: [ No opinion ] Rationale: Though many molecular system biology research centers now have significant infrastructure in terms of instrumentation to acquire âomics datasets, most of these datasets end up in study-specific data silos. SemPoD, using SysPro, enables cross-linking datasets across âomics and clinical studies as part of the translational research roadmap, facilitates integration with legacy data, and allows seamless query across different types of data. SysPro captures the experimental conditions or provenance, for example sample type, instrumentation, sample preparation, and statistical measures, to facilitate integration, filtering, and query research data in the Case CPB. --------------------------------- Provenance Exchange ---- Is this vocabulary extension generated or consumed by an implementation, which one(s)? SemPoD application These answers were last modified on 27 January 2013 at 00:34:17 U.T.C. by Satya Sahoo Answers to this questionnaire can be set and changed at https://www.w3.org/2002/09/wbs/46974/prov-vocabulary-survey/ until 2013-01-31. Regards, The Automatic WBS Mailer
Received on Sunday, 27 January 2013 00:36:05 UTC