Re: Safe manipulation of RDF data (from semantic-web)

Oops, I pointed you to the wrong mapping file - one that is already
built-in. Sorry about that.

This is the location-mapping.n3 for the Wikidata example:
https://raw.githubusercontent.com/AtomGraph/Processor/master/examples/location-mapping.n3

I think if you use this one, all should be good. Fingers crossed.

On Wed, Sep 18, 2019 at 3:09 PM Mikael Pesonen
<mikael.pesonen@lingsoft.fi> wrote:
>
>
> Mapping file was indeed html... So now got a bit further:
>
> 18-Sep-2019 13:06:13.088 WARNING [localhost-startStop-1]
> org.apache.catalina.util.SessionIdGeneratorBase.createSecureRandom
> Creation of SecureRandom instance for session ID generation using
> [SHA1PRNG] took [285,439] milliseconds.
> 18-Sep-2019 13:06:13.122 INFO [localhost-startStop-1]
> org.apache.catalina.startup.HostConfig.deployDescriptor Deployment of
> configuration descriptor
> /usr/local/tomcat/conf/Catalina/localhost/ROOT.xml has finished in
> 286,901 ms
> 18-Sep-2019 13:06:13.125 INFO [main]
> org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler
> ["http-apr-8080"]
> 18-Sep-2019 13:06:13.134 INFO [main]
> org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler
> ["ajp-apr-8009"]
> 18-Sep-2019 13:06:13.137 INFO [main]
> org.apache.catalina.startup.Catalina.start Server startup in 286945 ms
> 18-Sep-2019 13:06:13.280 INFO [http-apr-8080-exec-1]
> com.sun.jersey.server.impl.application.WebApplicationImpl._initiate
> Initiating Jersey application, version 'Jersey: 1.19 02/11/2015 03:25 AM'
> 13:06:13,435 DEBUG Jena:189 - Jena initialization
> 13:06:13,603 DEBUG FileManager:157 - Add location: LocatorFile
> 13:06:13,604 DEBUG FileManager:157 - Add location: ClassLoaderLocator
> 13:06:13,607 DEBUG LocationMapper:152 - Failed to find configuration:
> file:location-mapping.rdf;file:location-mapping.n3;file:location-mapping.ttl;file:etc/location-mapping.rdf;file:etc/location-mapping.n3;file:etc/location-mapping.ttl
> 13:06:13,607 DEBUG FileManager:157 - Add location: LocatorFile
> 13:06:13,608 DEBUG FileManager:157 - Add location: LocatorURL
> 13:06:13,609 DEBUG FileManager:157 - Add location: ClassLoaderLocator
> 13:06:13,614 DEBUG StreamManager:142 - Found: location-mapping.n3
> (ClassLoaderLocator)
> 13:06:13,993 DEBUG JenaIOEnvironment:119 - Mapping:
> http://www.w3.org/2011/http => com/atomgraph/processor/http.owl
> 13:06:13,993 DEBUG JenaIOEnvironment:119 - Mapping:
> https://www.w3.org/ns/ldt# => com/atomgraph/processor/ldt.ttl
> 13:06:13,994 DEBUG JenaIOEnvironment:119 - Mapping:
> http://rdfs.org/ns/void# => com/atomgraph/processor/void.owl
> 13:06:13,994 DEBUG JenaIOEnvironment:119 - Mapping:
> http://rdfs.org/ns/void# => com/atomgraph/processor/void.owl
> 13:06:13,995 DEBUG JenaIOEnvironment:119 - Mapping:
> http://xmlns.com/foaf/0.1/ => com/atomgraph/processor/foaf.owl
> 13:06:13,995 DEBUG JenaIOEnvironment:119 - Mapping:
> http://xmlns.com/foaf/0.1/ => com/atomgraph/processor/foaf.owl
> 13:06:13,995 DEBUG JenaIOEnvironment:119 - Mapping:
> http://www.w3.org/2011/http-statusCodes =>
> com/atomgraph/processor/http-statusCodes.rdf
> 13:06:13,996 DEBUG JenaIOEnvironment:119 - Mapping:
> http://spinrdf.org/spin# => etc/spin.ttl
> 13:06:13,997 DEBUG JenaIOEnvironment:119 - Mapping:
> https://www.w3.org/ns/ldt/core/templates# => com/atomgraph/processor/ct.ttl
> 13:06:13,997 DEBUG JenaIOEnvironment:119 - Mapping:
> http://www.w3.org/2011/http => com/atomgraph/processor/http.owl
> 13:06:13,998 DEBUG JenaIOEnvironment:119 - Mapping:
> http://www.w3.org/2011/http-statusCodes =>
> com/atomgraph/processor/http-statusCodes.rdf
> 13:06:13,998 DEBUG JenaIOEnvironment:119 - Mapping:
> https://www.w3.org/ns/ldt/core/templates# => com/atomgraph/processor/ct.ttl
> 13:06:13,998 DEBUG JenaIOEnvironment:119 - Mapping:
> https://www.w3.org/ns/ldt/document-hierarchy/domain# =>
> com/atomgraph/processor/dh.ttl
> 13:06:13,999 DEBUG JenaIOEnvironment:119 - Mapping:
> http://www.w3.org/2011/http-statusCodes# =>
> com/atomgraph/processor/http-statusCodes.rdf
> 13:06:13,999 DEBUG JenaIOEnvironment:119 - Mapping:
> https://www.w3.org/ns/ldt/core/domain# => com/atomgraph/processor/c.ttl
> 13:06:13,999 DEBUG JenaIOEnvironment:119 - Mapping:
> http://spinrdf.org/spin => etc/spin.ttl
> 13:06:14,000 DEBUG JenaIOEnvironment:119 - Mapping:
> https://www.w3.org/ns/ldt/topic-hierarchy/templates# =>
> com/atomgraph/processor/tht.ttl
> 13:06:14,000 DEBUG JenaIOEnvironment:119 - Mapping:
> http://www.w3.org/2011/http# => com/atomgraph/processor/http.owl
> 13:06:14,000 DEBUG JenaIOEnvironment:119 - Mapping:
> http://spinrdf.org/sp => etc/sp.ttl
> 13:06:14,001 DEBUG JenaIOEnvironment:119 - Mapping:
> http://spinrdf.org/sp => etc/sp.ttl
> 13:06:14,001 DEBUG JenaIOEnvironment:119 - Mapping:
> http://rdfs.org/sioc/ns# => com/atomgraph/processor/sioc.owl
> 13:06:14,001 DEBUG JenaIOEnvironment:119 - Mapping:
> http://spinrdf.org/sp# => etc/sp.ttl
> 13:06:14,001 DEBUG JenaIOEnvironment:119 - Mapping:
> https://www.w3.org/ns/ldt/document-hierarchy/domain# =>
> com/atomgraph/processor/dh.ttl
> 13:06:14,002 DEBUG JenaIOEnvironment:119 - Mapping:
> http://spinrdf.org/spl => etc/spl.spin.ttl
> 13:06:14,002 DEBUG JenaIOEnvironment:119 - Mapping:
> http://www.w3.org/2011/http-statusCodes# =>
> com/atomgraph/processor/http-statusCodes.rdf
> 13:06:14,002 DEBUG JenaIOEnvironment:119 - Mapping:
> https://www.w3.org/ns/ldt# => com/atomgraph/processor/ldt.ttl
> 13:06:14,003 DEBUG JenaIOEnvironment:119 - Mapping:
> http://spinrdf.org/spl# => etc/spl.spin.ttl
> 13:06:14,003 DEBUG JenaIOEnvironment:119 - Mapping:
> https://www.w3.org/ns/ldt/core/domain# => com/atomgraph/processor/c.ttl
> 13:06:14,003 DEBUG JenaIOEnvironment:119 - Mapping:
> http://www.w3.org/ns/sparql-service-description# =>
> com/atomgraph/processor/sparql-service.owl
> 13:06:14,004 DEBUG JenaIOEnvironment:119 - Mapping:
> https://www.w3.org/ns/ldt/named-graphs/templates# =>
> com/atomgraph/processor/ngt.ttl
> 13:06:14,004 DEBUG JenaIOEnvironment:119 - Mapping:
> http://spinrdf.org/spl => etc/spl.spin.ttl
> 13:06:14,004 DEBUG JenaIOEnvironment:119 - Mapping:
> http://spinrdf.org/spin# => etc/spin.ttl
> 13:06:14,005 DEBUG JenaIOEnvironment:119 - Mapping:
> http://rdfs.org/sioc/ns# => com/atomgraph/processor/sioc.owl
> 13:06:14,005 DEBUG JenaIOEnvironment:119 - Mapping:
> http://www.w3.org/2011/http# => com/atomgraph/processor/http.owl
> 13:06:14,005 DEBUG JenaIOEnvironment:119 - Mapping:
> http://spinrdf.org/sp# => etc/sp.ttl
> 13:06:14,006 DEBUG JenaIOEnvironment:119 - Mapping:
> https://www.w3.org/ns/ldt/topic-hierarchy/templates# =>
> com/atomgraph/processor/tht.ttl
> 13:06:14,006 DEBUG JenaIOEnvironment:119 - Mapping:
> http://www.w3.org/ns/sparql-service-description# =>
> com/atomgraph/processor/sparql-service.owl
> 13:06:14,006 DEBUG JenaIOEnvironment:119 - Mapping:
> http://spinrdf.org/spin => etc/spin.ttl
> 13:06:14,007 DEBUG JenaIOEnvironment:119 - Mapping:
> https://www.w3.org/ns/ldt/named-graphs/templates# =>
> com/atomgraph/processor/ngt.ttl
> 13:06:14,007 DEBUG JenaIOEnvironment:119 - Mapping:
> http://spinrdf.org/spl# => etc/spl.spin.ttl
> 13:06:14,050 DEBUG info:334 - System architecture: 64 bit
> 13:06:14,113 DEBUG FileManager:157 - Add location: LocatorFile
> 13:06:14,113 DEBUG FileManager:157 - Add location: LocatorURL
> 13:06:14,113 DEBUG FileManager:157 - Add location: ClassLoaderLocator
> 13:06:14,115 DEBUG FileManager:527 - Found: ont-policy.rdf
> (ClassLoaderLocator)
> 13:06:14,308 DEBUG FileManager:157 - Add location: LocatorFile
> 13:06:14,309 DEBUG FileManager:157 - Add location: ClassLoaderLocator
> 13:06:14,309 DEBUG FileManager:527 - Found: location-mapping.n3
> (ClassLoaderLocator)
> 13:06:14,334 DEBUG LocationMapper:371 - Mapping: http://spinrdf.org/spin
> => etc/spin.ttl
> 13:06:14,335 DEBUG LocationMapper:371 - Mapping: http://spinrdf.org/spl#
> => etc/spl.spin.ttl
> 13:06:14,335 DEBUG LocationMapper:371 - Mapping:
> http://rdfs.org/ns/void# => com/atomgraph/processor/void.owl
> 13:06:14,336 DEBUG LocationMapper:371 - Mapping:
> https://www.w3.org/ns/ldt/core/domain# => com/atomgraph/processor/c.ttl
> 13:06:14,336 DEBUG LocationMapper:371 - Mapping:
> http://www.w3.org/ns/sparql-service-description# =>
> com/atomgraph/processor/sparql-service.owl
> 13:06:14,336 DEBUG LocationMapper:371 - Mapping:
> http://www.w3.org/2011/http# => com/atomgraph/processor/http.owl
> 13:06:14,337 DEBUG LocationMapper:371 - Mapping:
> http://spinrdf.org/spin# => etc/spin.ttl
> 13:06:14,337 DEBUG LocationMapper:371 - Mapping:
> http://rdfs.org/sioc/ns# => com/atomgraph/processor/sioc.owl
> 13:06:14,337 DEBUG LocationMapper:371 - Mapping: http://spinrdf.org/sp
> => etc/sp.ttl
> 13:06:14,338 DEBUG LocationMapper:371 - Mapping:
> http://www.w3.org/2011/http-statusCodes =>
> com/atomgraph/processor/http-statusCodes.rdf
> 13:06:14,338 DEBUG LocationMapper:371 - Mapping:
> https://www.w3.org/ns/ldt/core/templates# => com/atomgraph/processor/ct.ttl
> 13:06:14,338 DEBUG LocationMapper:371 - Mapping:
> http://xmlns.com/foaf/0.1/ => com/atomgraph/processor/foaf.owl
> 13:06:14,339 DEBUG LocationMapper:371 - Mapping:
> https://www.w3.org/ns/ldt/document-hierarchy/domain# =>
> com/atomgraph/processor/dh.ttl
> 13:06:14,339 DEBUG LocationMapper:371 - Mapping:
> http://www.w3.org/ns/sparql-service-description# =>
> com/atomgraph/processor/sparql-service.owl
> 13:06:14,339 DEBUG LocationMapper:371 - Mapping:
> http://rdfs.org/sioc/ns# => com/atomgraph/processor/sioc.owl
> 13:06:14,340 DEBUG LocationMapper:371 - Mapping:
> https://www.w3.org/ns/ldt/document-hierarchy/domain# =>
> com/atomgraph/processor/dh.ttl
> 13:06:14,340 DEBUG LocationMapper:371 - Mapping:
> https://www.w3.org/ns/ldt/named-graphs/templates# =>
> com/atomgraph/processor/ngt.ttl
> 13:06:14,340 DEBUG LocationMapper:371 - Mapping:
> http://www.w3.org/2011/http-statusCodes =>
> com/atomgraph/processor/http-statusCodes.rdf
> 13:06:14,341 DEBUG LocationMapper:371 - Mapping:
> https://www.w3.org/ns/ldt/named-graphs/templates# =>
> com/atomgraph/processor/ngt.ttl
> 13:06:14,341 DEBUG LocationMapper:371 - Mapping: http://spinrdf.org/sp#
> => etc/sp.ttl
> 13:06:14,341 DEBUG LocationMapper:371 - Mapping: http://spinrdf.org/spl#
> => etc/spl.spin.ttl
> 13:06:14,342 DEBUG LocationMapper:371 - Mapping:
> https://www.w3.org/ns/ldt/core/domain# => com/atomgraph/processor/c.ttl
> 13:06:14,342 DEBUG LocationMapper:371 - Mapping: http://spinrdf.org/spl
> => etc/spl.spin.ttl
> 13:06:14,342 DEBUG LocationMapper:371 - Mapping: http://spinrdf.org/spl
> => etc/spl.spin.ttl
> 13:06:14,343 DEBUG LocationMapper:371 - Mapping:
> http://www.w3.org/2011/http => com/atomgraph/processor/http.owl
> 13:06:14,343 DEBUG LocationMapper:371 - Mapping:
> https://www.w3.org/ns/ldt# => com/atomgraph/processor/ldt.ttl
> 13:06:14,343 DEBUG LocationMapper:371 - Mapping: http://spinrdf.org/spin
> => etc/spin.ttl
> 13:06:14,344 DEBUG LocationMapper:371 - Mapping:
> http://spinrdf.org/spin# => etc/spin.ttl
> 13:06:14,344 DEBUG LocationMapper:371 - Mapping: http://spinrdf.org/sp#
> => etc/sp.ttl
> 13:06:14,344 DEBUG LocationMapper:371 - Mapping:
> https://www.w3.org/ns/ldt/topic-hierarchy/templates# =>
> com/atomgraph/processor/tht.ttl
> 13:06:14,344 DEBUG LocationMapper:371 - Mapping:
> http://rdfs.org/ns/void# => com/atomgraph/processor/void.owl
> 13:06:14,345 DEBUG LocationMapper:371 - Mapping:
> http://www.w3.org/2011/http-statusCodes# =>
> com/atomgraph/processor/http-statusCodes.rdf
> 13:06:14,345 DEBUG LocationMapper:371 - Mapping:
> http://www.w3.org/2011/http-statusCodes# =>
> com/atomgraph/processor/http-statusCodes.rdf
> 13:06:14,345 DEBUG LocationMapper:371 - Mapping:
> https://www.w3.org/ns/ldt# => com/atomgraph/processor/ldt.ttl
> 13:06:14,346 DEBUG LocationMapper:371 - Mapping:
> http://xmlns.com/foaf/0.1/ => com/atomgraph/processor/foaf.owl
> 13:06:14,346 DEBUG LocationMapper:371 - Mapping:
> https://www.w3.org/ns/ldt/core/templates# => com/atomgraph/processor/ct.ttl
> 13:06:14,346 DEBUG LocationMapper:371 - Mapping:
> http://www.w3.org/2011/http => com/atomgraph/processor/http.owl
> 13:06:14,347 DEBUG LocationMapper:371 - Mapping: http://spinrdf.org/sp
> => etc/sp.ttl
> 13:06:14,347 DEBUG LocationMapper:371 - Mapping:
> https://www.w3.org/ns/ldt/topic-hierarchy/templates# =>
> com/atomgraph/processor/tht.ttl
> 13:06:14,347 DEBUG LocationMapper:371 - Mapping:
> http://www.w3.org/2011/http# => com/atomgraph/processor/http.owl
> 13:06:14,900 DEBUG FileManager:157 - Add location: LocatorFile
> 13:06:14,901 DEBUG FileManager:157 - Add location: LocatorURL
> 13:06:14,902 DEBUG FileManager:157 - Add location: ClassLoaderLocator
> 13:06:14,904 DEBUG Application:179 - FileManager.get():
> com.atomgraph.core.util.jena.DataManager@2991c893
> 13:06:14,904 DEBUG Application:182 -
> OntDocumentManager.getInstance().getFileManager():
> com.atomgraph.core.util.jena.DataManager@2991c893
> 13:06:14,906 DEBUG OntologyProvider:183 - Loading sitemap ontology from
> URI: https://github.com/AtomGraph/Processor/blob/develop/examples/wikidata#
> 13:06:14,929 DEBUG FileManager:466 - Not mapped:
> https://github.com/AtomGraph/Processor/blob/develop/examples/wikidata#
> 1 * Client out-bound request
> 1 > GET
> https://github.com/AtomGraph/Processor/blob/develop/examples/wikidata
> 1 > Accept:
> application/rdf+xml,text/rdf+n3,application/n-triples,text/csv,application/rdf+xml,application/rdf+thrift,text/turtle,application/rdf+json
> 13:06:35,068  WARN OntDocumentManager:1076 - An error occurred while
> attempting to read from
> https://github.com/AtomGraph/Processor/blob/develop/examples/wikidata#.
> Msg was 'java.net.UnknownHostException: github.com'.
> com.sun.jersey.api.client.ClientHandlerException:
> java.net.UnknownHostException: github.com
>          at
> com.sun.jersey.client.urlconnection.URLConnectionClientHandler.handle(URLConnectionClientHandler.java:155)
>          at
> com.sun.jersey.api.client.filter.LoggingFilter.handle(LoggingFilter.java:217)
>          at com.sun.jersey.api.client.Client.handle(Client.java:652)
>          at
> com.sun.jersey.api.client.WebResource.handle(WebResource.java:682)
>          at
> com.sun.jersey.api.client.WebResource.access$200(WebResource.java:74)
>          at
> com.sun.jersey.api.client.WebResource$Builder.get(WebResource.java:509)
>          at
> com.atomgraph.core.client.LinkedDataClient.get(LinkedDataClient.java:91)
>          at
> com.atomgraph.core.client.LinkedDataClient.get(LinkedDataClient.java:80)
>          at
> com.atomgraph.core.client.LinkedDataClient.get(LinkedDataClient.java:99)
>          at
> com.atomgraph.core.util.jena.DataManager.readModel(DataManager.java:150)
>          at
> org.apache.jena.ontology.OntDocumentManager.read(OntDocumentManager.java:1062)
>          at
> org.apache.jena.ontology.OntDocumentManager.getOntology(OntDocumentManager.java:584)
>          at
> com.atomgraph.server.provider.OntologyProvider.getOntModel(OntologyProvider.java:187)
>          at
> com.atomgraph.server.provider.OntologyProvider.<init>(OntologyProvider.java:72)
>          at com.atomgraph.server.Application.init(Application.java:197)
>          at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>          at
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
>          at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
>          at java.lang.reflect.Method.invoke(Method.java:498)
>          at
> com.sun.jersey.core.spi.component.ComponentConstructor.getInstance(ComponentConstructor.java:183)
>          at
> com.sun.jersey.core.spi.component.ProviderFactory.__getComponentProvider(ProviderFactory.java:166)
>          at
> com.sun.jersey.core.spi.component.ProviderFactory._getComponentProvider(ProviderFactory.java:159)
>          at
> com.sun.jersey.core.spi.component.ProviderFactory.getComponentProvider(ProviderFactory.java:153)
>          at
> com.sun.jersey.server.impl.application.DeferredResourceConfig$ApplicationHolder.<init>(DeferredResourceConfig.java:86)
>          at
> com.sun.jersey.server.impl.application.DeferredResourceConfig$ApplicationHolder.<init>(DeferredResourceConfig.java:79)
>          at
> com.sun.jersey.server.impl.application.DeferredResourceConfig.getApplication(DeferredResourceConfig.java:76)
>          at
> com.sun.jersey.server.impl.application.WebApplicationImpl._initiate(WebApplicationImpl.java:1164)
>          at
> com.sun.jersey.server.impl.application.WebApplicationImpl.access$700(WebApplicationImpl.java:180)
>          at
> com.sun.jersey.server.impl.application.WebApplicationImpl$13.f(WebApplicationImpl.java:799)
>          at
> com.sun.jersey.server.impl.application.WebApplicationImpl$13.f(WebApplicationImpl.java:795)
>          at
> com.sun.jersey.spi.inject.Errors.processWithErrors(Errors.java:193)
>          at
> com.sun.jersey.server.impl.application.WebApplicationImpl.initiate(WebApplicationImpl.java:795)
>          at
> com.sun.jersey.server.impl.application.WebApplicationImpl.initiate(WebApplicationImpl.java:790)
>          at
> com.sun.jersey.spi.container.servlet.ServletContainer.initiate(ServletContainer.java:509)
>          at
> com.sun.jersey.spi.container.servlet.ServletContainer$InternalWebComponent.initiate(ServletContainer.java:339)
>          at
> com.sun.jersey.spi.container.servlet.WebComponent.load(WebComponent.java:605)
>          at
> com.sun.jersey.spi.container.servlet.WebComponent.init(WebComponent.java:207)
>          at
> com.sun.jersey.spi.container.servlet.ServletContainer.init(ServletContainer.java:394)
>          at
> com.sun.jersey.spi.container.servlet.ServletContainer.init(ServletContainer.java:577)
>          at javax.servlet.GenericServlet.init(GenericServlet.java:158)
>          at
> org.apache.catalina.core.StandardWrapper.initServlet(StandardWrapper.java:1188)
>          at
> org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1132)
>          at
> org.apache.catalina.core.StandardWrapper.allocate(StandardWrapper.java:811)
>          at
> org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:135)
>          at
> org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:94)
>          at
> org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:496)
>          at
> org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:141)
>          at
> org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:79)
>          at
> org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:620)
>          at
> org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:88)
>          at
> org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:502)
>          at
> org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1156)
>          at
> org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:684)
>          at
> org.apache.tomcat.util.net.AprEndpoint$SocketWithOptionsProcessor.run(AprEndpoint.java:2464)
>          at
> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
>          at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
>          at
> org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
>          at java.lang.Thread.run(Thread.java:748)
> Caused by: java.net.UnknownHostException: github.com
>          at
> java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:184)
>          at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
>          at java.net.Socket.connect(Socket.java:589)
>          at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:673)
>          at
> sun.security.ssl.BaseSSLSocketImpl.connect(BaseSSLSocketImpl.java:173)
>          at sun.net.NetworkClient.doConnect(NetworkClient.java:180)
>          at sun.net.www.http.HttpClient.openServer(HttpClient.java:463)
>          at sun.net.www.http.HttpClient.openServer(HttpClient.java:558)
>          at
> sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
>          at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
>          at
> sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
>          at
> sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1156)
>          at
> sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1050)
>          at
> sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
>          at
> sun.net.www.protocol.http.HttpURLConnection.getInputStream0(HttpURLConnection.java:1564)
>          at
> sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1492)
>          at
> java.net.HttpURLConnection.getResponseCode(HttpURLConnection.java:480)
>          at
> sun.net.www.protocol.https.HttpsURLConnectionImpl.getResponseCode(HttpsURLConnectionImpl.java:347)
>          at
> com.sun.jersey.client.urlconnection.URLConnectionClientHandler._invoke(URLConnectionClientHandler.java:253)
>          at
> com.sun.jersey.client.urlconnection.URLConnectionClientHandler.handle(URLConnectionClientHandler.java:153)
>          ... 57 more
> 18-Sep-2019 13:06:35.087 SEVERE [http-apr-8080-exec-1]
> com.sun.jersey.core.spi.component.ProviderFactory.__getComponentProvider
> The provider class, class com.atomgraph.server.Application, could not be
> instantiated. Processing will continue but the class will not be utilized
>   java.lang.IllegalArgumentException: Ontology cannot be null
>          at
> com.atomgraph.server.provider.OntologyProvider$ImportCycleChecker.check(OntologyProvider.java:96)
>          at
> com.atomgraph.server.provider.OntologyProvider.<init>(OntologyProvider.java:76)
>          at com.atomgraph.server.Application.init(Application.java:197)
>          at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>          at
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
>          at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
>          at java.lang.reflect.Method.invoke(Method.java:498)
>          at
> com.sun.jersey.core.spi.component.ComponentConstructor.getInstance(ComponentConstructor.java:183)
>          at
> com.sun.jersey.core.spi.component.ProviderFactory.__getComponentProvider(ProviderFactory.java:166)
>          at
> com.sun.jersey.core.spi.component.ProviderFactory._getComponentProvider(ProviderFactory.java:159)
>          at
> com.sun.jersey.core.spi.component.ProviderFactory.getComponentProvider(ProviderFactory.java:153)
>          at
> com.sun.jersey.server.impl.application.DeferredResourceConfig$ApplicationHolder.<init>(DeferredResourceConfig.java:86)
>          at
> com.sun.jersey.server.impl.application.DeferredResourceConfig$ApplicationHolder.<init>(DeferredResourceConfig.java:79)
>          at
> com.sun.jersey.server.impl.application.DeferredResourceConfig.getApplication(DeferredResourceConfig.java:76)
>          at
> com.sun.jersey.server.impl.application.WebApplicationImpl._initiate(WebApplicationImpl.java:1164)
>          at
> com.sun.jersey.server.impl.application.WebApplicationImpl.access$700(WebApplicationImpl.java:180)
>          at
> com.sun.jersey.server.impl.application.WebApplicationImpl$13.f(WebApplicationImpl.java:799)
>          at
> com.sun.jersey.server.impl.application.WebApplicationImpl$13.f(WebApplicationImpl.java:795)
>          at
> com.sun.jersey.spi.inject.Errors.processWithErrors(Errors.java:193)
>          at
> com.sun.jersey.server.impl.application.WebApplicationImpl.initiate(WebApplicationImpl.java:795)
>          at
> com.sun.jersey.server.impl.application.WebApplicationImpl.initiate(WebApplicationImpl.java:790)
>          at
> com.sun.jersey.spi.container.servlet.ServletContainer.initiate(ServletContainer.java:509)
>          at
> com.sun.jersey.spi.container.servlet.ServletContainer$InternalWebComponent.initiate(ServletContainer.java:339)
>          at
> com.sun.jersey.spi.container.servlet.WebComponent.load(WebComponent.java:605)
>          at
> com.sun.jersey.spi.container.servlet.WebComponent.init(WebComponent.java:207)
>          at
> com.sun.jersey.spi.container.servlet.ServletContainer.init(ServletContainer.java:394)
>          at
> com.sun.jersey.spi.container.servlet.ServletContainer.init(ServletContainer.java:577)
>          at javax.servlet.GenericServlet.init(GenericServlet.java:158)
>          at
> org.apache.catalina.core.StandardWrapper.initServlet(StandardWrapper.java:1188)
>          at
> org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1132)
>          at
> org.apache.catalina.core.StandardWrapper.allocate(StandardWrapper.java:811)
>          at
> org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:135)
>          at
> org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:94)
>          at
> org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:496)
>          at
> org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:141)
>          at
> org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:79)
>          at
> org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:620)
>          at
> org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:88)
>          at
> org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:502)
>          at
> org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1156)
>          at
> org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:684)
>          at
> org.apache.tomcat.util.net.AprEndpoint$SocketWithOptionsProcessor.run(AprEndpoint.java:2464)
>          at
> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
>          at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
>          at
> org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
>          at java.lang.Thread.run(Thread.java:748)
>

Received on Wednesday, 18 September 2019 13:39:07 UTC