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Re: Documents for Dominique?

From: Gray, Alasdair J G <A.J.G.Gray@hw.ac.uk>
Date: Sun, 11 Jun 2017 20:03:55 +0000
To: Aurélien Luciani <luciani@ebi.ac.uk>
CC: Dominique Batista <dominique.batista@france-bioinformatique.fr>, "Sarala Wimalaratne" <sarala@ebi.ac.uk>, "public-bioschemas@w3.org" <public-bioschemas@w3.org>, Carole Goble <carole.goble@manchester.ac.uk>
Message-ID: <BABBD738-0EB0-4B07-9179-9DCD0AFE503E@hw.ac.uk>
Hi Aurélien,

I have just created a repository for Biological Entity.
https://github.com/BioSchemas/BiologicalEntity <https://github.com/BioSchemas/BiologicalEntity>

Could you upload your files into an examples/interpro directory?

Many thanks

Alasdair

> On 9 Jun 2017, at 11:59, Aurélien Luciani <luciani@ebi.ac.uk> wrote:
> 
> Hi,
> 
> Here are attached the latest InterPro examples I have at the moment.
> I wanted to have a bit more feed back from inside the Protein working group, and to have access to the DataRepository/Dataset/DatasetItem examples before putting them more publicly.
> Because of that, feel free to overlook DataRepository/Dataset-specific parts of the documents if they are not exactly what you are expecting, since they might change a bit once I get my hand on more examples.
> 
> These examples would be the full annotation of a webpage, for which you can find the existing published page in the “url” field of the root.
> 
> Aurélien Luciani
> 
> El dj., 8 de juny 2017 a les 15:01, Dominique Batista (<dominique.batista@france-bioinformatique.fr <mailto:dominique.batista@france-bioinformatique.fr>>) va escriure:
> Hello everyone,
> I've checked the BiologicalEntity repo and the usescases/examples provided are exactly what we were expecting. I think we are going to use InterPro examples to showcase the process to the french platforms but it's not settled yet.
> As far as we are concerned, we do not need more examples.
> 
> I should also let you guys know that we are currently working on a crawler/validator written in PHP and that can be implemented as a drupal module. Interpro examples will probably be my use-case for the the BiologicalEntity specs.
> 
> 
> Best wishes to everyone :)
> 
> 
> Dominique
> 
> 
> On 08/06/17 15:25, Sarala Wimalaratne wrote:
>> Hi Dominique,
>> 
>> I will push Identifiers.org <http://identifiers.org/> data repository description example <https://docs.google.com/document/d/14as5lQFOASY8rqcAQf2HoHTh0n22Lq4NeOMOSOLlBik/edit> to production early next week.
>> 
>> May be you could use https://search.google.com/structured-data/testing-tool <https://search.google.com/structured-data/testing-tool> to explain the content. Please let me know if you need any further material.
>> 
>> Cheers,
>> Sarala
>> 
>>> On 8 Jun 2017, at 13:18, Carole Goble <carole.goble@manchester.ac..uk <mailto:carole.goble@manchester.ac.uk>> wrote:
>>> 
>>> Yes,  Alasdair and I   were thinking the same...
>>> 
>>> Carole
>>> 
>>>> Hi all,
>>>> 
>>>> Is it not about time to pass on some documents to Dominique for the conference in France?
>>>> 
>>>> @Doominique, have you seen what we have in the BiologicalEntity specification folder? Could you please let us know whether something there could be useful for you? And what else would be useful for you?
>>>> 
>>>> Regards,
>>>> 
>>> 
>>> --
>>> Professor Carole Goble CBE FREng FBCS CITP
>>> School of Computer Science
>>> University of Manchester
>>> Manchester, UK
>>> 
>>> tel: +44 161 275 6195 <tel:+44%20161%20275%206195>
>>> email: carole.goble@manchester.ac.uk <mailto:carole.goble@manchester.ac.uk>
>>> twitter: @CaroleAnneGoble
>>> 
>>> email etiquette:
>>> I get a lot of email and when I travel it gets even more backed up.
>>> 
>>> - Don't get too upset if my replies are short (see http://www.phdcomics.com/comics/archive.php?comicid=1047 <http://www.phdcomics.com/comics/archive.php?comicid=1047>)
>>> - If you don't get a reply within 48 hours there is a good chance the email has scrolled into the distance. If its urgent try again or email melanie.price@manchester.ac.uk <mailto:melanie.price@manchester.ac.uk>.
>>> If you haven't heard within a week you really should try again.
>>> 
>>> 
>>> 
>> 
> 
> --
> Aurélien Luciani
> 
> Software/Web Developer
> European Bioinformatics Institute (EMBL-EBI)
> Main Building, A3-43, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
> 
> Office tel: + 44 (0) 1223 49 4273
> 
> <InterPro-home.json><IPR001452.json><InterPro-Pfam-entries.json><P00519.json><InterPro-entries.json><IPR001452_proteins.json>

Alasdair J G Gray
Fellow of the Higher Education Academy
Assistant Professor in Computer Science,
School of Mathematical and Computer Sciences
(Athena SWAN Bronze Award)
Heriot-Watt University, Edinburgh UK.

Email: A.J.G.Gray@hw.ac.uk <mailto:A.J.G.Gray@hw.ac.uk>
Web: http://www.macs.hw.ac.uk/~ajg33 <http://www.macs.hw.ac.uk/~ajg33>
ORCID: http://orcid.org/0000-0002-5711-4872 <http://orcid.org/0000-0002-5711-4872>
Office: Earl Mountbatten Building 1.39
Twitter: @gray_alasdair


Received on Sunday, 11 June 2017 20:04:36 UTC

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