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Re: Expression RDF note

From: Helena Deus <helenadeus@gmail.com>
Date: Mon, 10 Sep 2012 17:24:57 +0100
Cc: Michel Dumontier <michel.dumontier@gmail.com>, Michael Miller <Michael.Miller@systemsbiology.org>, HCLS <public-semweb-lifesci@w3.org>, "expressionrdf@googlegroups.com" <expressionrdf@googlegroups.com>, "ilpuccio.febo@gmail.com" <ilpuccio.febo@gmail.com>, "chisato-yamasaki@aist.go.jp" <chisato-yamasaki@aist.go.jp>
Message-Id: <2FDB3429-9BBA-49B8-90FA-73A667338D50@gmail.com>
To: "Lin MD, Simon" <LINMD.SIMON@mcrf.mfldclin.edu>

we discussed, at some point, that NGS data should be supported by the note. 

should we call it transcriptomic representation note instead? both the term "gene expression" and the note itself are still associated with microarrays, a completelly different strategy from NGS. but both are related to transcriptomics.


Helena F. Deus, PhD
Unit Leader, Bioinformatics and Computational Biology
Digital Enterprise Research Institute
+353 91 495 270

On Sep 10, 2012, at 5:13 PM, Lin MD, Simon wrote:

> The W3C gene expression note is also of interest to me. I would be happy to contribute a use case of Gene Screening from Next Generation Sequencing. What is the time line of this project? I might not be able to work on it much till the end of Sept. With regard to meetings, I am open and flexible. Thanks! -Simon
> ==================================================
> Simon Lin, MD | Director, Biomedical Informatics Research Center | Marshfield Clinic Research Foundation | 1000 N Oak Ave, Marshfield, WI 54449 | 715-221-7299 | Lin.Simon@mcrf.mfldclin.edu |www.marshfieldclinic.org/birc
> For scheduling assistance, please contact Crystal Gumz, Administrative Secretary | 715-221-6403 |gumz.crystal@mcrf.mfldclin.edu 
> From: Michel Dumontier [mailto:michel.dumontier@gmail.com] 
> Sent: Monday, September 10, 2012 10:56 AM
> To: Michael Miller
> Cc: HCLS; expressionrdf@googlegroups.com; ilpuccio.febo@gmail.com; chisato-yamasaki@aist.go.jp
> Subject: Expression RDF note
> Hi,
>  While I was at a very productive BioHackathon, Raoul and Chisato (cc'd) expressed interest in the W3C gene expression note. 
> https://docs.google.com/document/d/1A5-3tOsifPWPpETBKU-ZA9d7O7wK_nBzTFUBEe-0Bzo/edit?authkey=CK-y8Y8C&authkey=CK-y8Y8C
> I'm now teaching every Monday between 10am and 11:30am EDT, so I would prefer that the time be changed for me to participate. However, with participants in North America, Europe and Japan, our scheduling may become significantly more challenging.  Suggestions?
> m.
> --
> Michel Dumontier
> Associate Professor of Bioinformatics, Carleton University
> Chair, W3C Semantic Web for Health Care and the Life Sciences Interest Group
> http://dumontierlab.com
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Received on Monday, 10 September 2012 16:25:27 UTC

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