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RE: REMINDER - systems biology telco - 11 EDT (in 30 mins)

From: Michael Miller <Michael.Miller@systemsbiology.org>
Date: Sun, 9 Sep 2012 08:47:43 -0700
Message-ID: <cefaacc00de00db7114026d7e1a45258@mail.gmail.com>
To: "M. Scott Marshall" <mscottmarshall@gmail.com>
Cc: W3C HCLSIG hcls <public-semweb-lifesci@w3.org>, Laleh.Kazemzadeh@deri.org
hi scott,

thanks

cheers,
michael

> -----Original Message-----
> From: M. Scott Marshall [mailto:mscottmarshall@gmail.com]
> Sent: Thursday, September 06, 2012 9:49 AM
> To: Michael Miller
> Cc: Helena Deus; W3C HCLSIG hcls; Laleh.Kazemzadeh@deri.org
> Subject: Re: REMINDER - systems biology telco - 11 EDT (in 30 mins)
>
> Hi Michael,
>
> Sorry - no slides. Laleh (DERI) showed us "live" how she loaded data
> from a spreadsheet into Google Refine, filtered for Entrez genes,
> human proteins and genes, then exported to RDF using the Richard
> Cyganiak plugin, then queried the data with SPARQL.
>
> That reminded me of some explorative work reconciliating Google Refine
> entries with NCBO ontologies that Fumi and I did at last year's
> Biohackathon, with help from Trish. You can see what I shared about
> that in the minutes: http://www.w3.org/2012/09/06-hcls-minutes.html
>
> Obliquely related is an idea that I recently had for IFTTT:
> http://radar.oreilly.com/2012/09/true-data-liberation.html
>
> where you could store things to a triple store using SPARQL Update
> Language (instead of to a Google Doc Spreadsheet, for example). Seems
> like it could be fun..
>
> -Scott
>
> --
> M. Scott Marshall, PhD
> MAASTRO clinic, http://www.maastro.nl/en/1/
> http://eurecaproject.eu/
> https://plus.google.com/u/0/114642613065018821852/posts
> http://www.linkedin.com/pub/m-scott-marshall/5/464/a22
>
> On Thu, Sep 6, 2012 at 5:37 PM, Michael Miller
> <Michael.Miller@systemsbiology.org> wrote:
> > hi all,
> >
> >
> >
> > apologies for missing the talk, i look forward to seeing the slides.
> >
> >
> >
> > cheers,
> >
> > michael
> >
> >
> >
> > Michael Miller
> >
> > Software Engineer
> >
> > Institute for Systems Biology
> >
> >
> >
> >
> >
> > From: Helena Deus [mailto:helenadeus@gmail.com]
> > Sent: Thursday, September 06, 2012 7:37 AM
> > To: W3C HCLSIG hcls; <Laleh.Kazemzadeh@deri.org>
> >
> >
> > Subject: REMINDER - systems biology telco - 11 EDT (in 30 mins)
> >
> >
> >
> > This is a reminder that the SysBio telco will start in 30 mins.
> >
> >
> >
> > Webex link is:
> >
> https://deri.webex.com/deri/e.php?AT=WMI&EventID=223409947&PW=25b
> 5785f0b5e4b565b7664&RT=MTgjMjE%3D
> >
> >
> >
> > But please note that we will be using the W3C Zakim bridge for voice:
> > +1.617.761.6200 (Cambridge, MA)
> >
> >
> >
> > IRC/Minutes Channel: irc.w3.org (under channel type #hcls)
> >
> > On Wed, Sep 5, 2012 at 12:47 PM, Helena Deus <helenadeus@gmail.com>
> wrote:
> >
> > Dear all,
> >
> >
> >
> > Please join me for the next semantic systems biology telco - tomorrow
at
> > 11AM EDT.
> >
> >
> >
> > As a continuation of the work in the previous telcos, we will be
working on
> > the identification of protein protein interaction nextworks by
integrating
> > data from multiple sources, which we have now RDFized
> >
> > - CIDER : http://mips.helmholtz-muenchen.de/cider/
> >
> > - Reactome as BioPAx
> >
> > - SBML as BioPax
> >
> >
> >
> > Laleh Kazemzadeh be he presenting, she will talk about the structure
of
> the
> > data, how to query it and how it can be used for identifying PPI.
> >
> >
> >
> > Dial-In #: +1.617.761.6200 (Cambridge, MA)
> > VoIP address: sip:zakim@voip.w3.org
> > Participant Access Code: 4257 ("HCLS")
> > IRC Channel: irc.w3.org port 6665 channel #HCLS
> > IRC Web: http://goo.gl/A6WZn
> > Group WebPage: http://www.w3.org/wiki/HCLSIG/SysBio
> >
> > Duration: ~1 hour
> > Frequency: bi-weekly
> > Convener: Laleh
> >
> >
> >
> >
> >
> > --
> > Helena F. Deus, PhD
> >
> > Unit Leader, Bioinformatics and Systems Biology
> >
> > Post-Doctoral Researcher
> >
> > Digital Enterprise Research Institute (DERI/NUIG)
> >
> > http://lenadeus.info/
> >
> >
>
>
>
> --
> M. Scott Marshall, PhD
> MAASTRO clinic, http://www.maastro.nl/en/1/
> http://eurecaproject.eu/
> https://plus.google.com/u/0/114642613065018821852/posts
> http://www.linkedin.com/pub/m-scott-marshall/5/464/a22
Received on Sunday, 9 September 2012 15:48:08 GMT

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