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Re: REMINDER - systems biology telco - 11 EDT (in 30 mins)

From: M. Scott Marshall <mscottmarshall@gmail.com>
Date: Thu, 6 Sep 2012 18:49:28 +0200
Message-ID: <CACHzV2Nunz7TpNEU=YyrBFr5uB3K=UiCPyJ+vv59H8gT+i8wzw@mail.gmail.com>
To: Michael Miller <Michael.Miller@systemsbiology.org>
Cc: Helena Deus <helenadeus@gmail.com>, W3C HCLSIG hcls <public-semweb-lifesci@w3.org>, Laleh.Kazemzadeh@deri.org
Hi Michael,

Sorry - no slides. Laleh (DERI) showed us "live" how she loaded data
from a spreadsheet into Google Refine, filtered for Entrez genes,
human proteins and genes, then exported to RDF using the Richard
Cyganiak plugin, then queried the data with SPARQL.

That reminded me of some explorative work reconciliating Google Refine
entries with NCBO ontologies that Fumi and I did at last year's
Biohackathon, with help from Trish. You can see what I shared about
that in the minutes: http://www.w3.org/2012/09/06-hcls-minutes.html

Obliquely related is an idea that I recently had for IFTTT:
http://radar.oreilly.com/2012/09/true-data-liberation.html

where you could store things to a triple store using SPARQL Update
Language (instead of to a Google Doc Spreadsheet, for example). Seems
like it could be fun..

-Scott

-- 
M. Scott Marshall, PhD
MAASTRO clinic, http://www.maastro.nl/en/1/
http://eurecaproject.eu/
https://plus.google.com/u/0/114642613065018821852/posts
http://www.linkedin.com/pub/m-scott-marshall/5/464/a22

On Thu, Sep 6, 2012 at 5:37 PM, Michael Miller
<Michael.Miller@systemsbiology.org> wrote:
> hi all,
>
>
>
> apologies for missing the talk, i look forward to seeing the slides.
>
>
>
> cheers,
>
> michael
>
>
>
> Michael Miller
>
> Software Engineer
>
> Institute for Systems Biology
>
>
>
>
>
> From: Helena Deus [mailto:helenadeus@gmail.com]
> Sent: Thursday, September 06, 2012 7:37 AM
> To: W3C HCLSIG hcls; <Laleh.Kazemzadeh@deri.org>
>
>
> Subject: REMINDER - systems biology telco - 11 EDT (in 30 mins)
>
>
>
> This is a reminder that the SysBio telco will start in 30 mins.
>
>
>
> Webex link is:
> https://deri.webex.com/deri/e.php?AT=WMI&EventID=223409947&PW=25b5785f0b5e4b565b7664&RT=MTgjMjE%3D
>
>
>
> But please note that we will be using the W3C Zakim bridge for voice:
> +1.617.761.6200 (Cambridge, MA)
>
>
>
> IRC/Minutes Channel: irc.w3.org (under channel type #hcls)
>
> On Wed, Sep 5, 2012 at 12:47 PM, Helena Deus <helenadeus@gmail.com> wrote:
>
> Dear all,
>
>
>
> Please join me for the next semantic systems biology telco - tomorrow at
> 11AM EDT.
>
>
>
> As a continuation of the work in the previous telcos, we will be working on
> the identification of protein protein interaction nextworks by integrating
> data from multiple sources, which we have now RDFized
>
> - CIDER : http://mips.helmholtz-muenchen.de/cider/
>
> - Reactome as BioPAx
>
> - SBML as BioPax
>
>
>
> Laleh Kazemzadeh be he presenting, she will talk about the structure of the
> data, how to query it and how it can be used for identifying PPI.
>
>
>
> Dial-In #: +1.617.761.6200 (Cambridge, MA)
> VoIP address: sip:zakim@voip.w3.org
> Participant Access Code: 4257 ("HCLS")
> IRC Channel: irc.w3.org port 6665 channel #HCLS
> IRC Web: http://goo.gl/A6WZn
> Group WebPage: http://www.w3.org/wiki/HCLSIG/SysBio
>
> Duration: ~1 hour
> Frequency: bi-weekly
> Convener: Laleh
>
>
>
>
>
> --
> Helena F. Deus, PhD
>
> Unit Leader, Bioinformatics and Systems Biology
>
> Post-Doctoral Researcher
>
> Digital Enterprise Research Institute (DERI/NUIG)
>
> http://lenadeus.info/
>
>



-- 
M. Scott Marshall, PhD
MAASTRO clinic, http://www.maastro.nl/en/1/
http://eurecaproject.eu/
https://plus.google.com/u/0/114642613065018821852/posts
http://www.linkedin.com/pub/m-scott-marshall/5/464/a22
Received on Thursday, 6 September 2012 16:50:00 GMT

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