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HCLS SciDiscourse call Monday April 2, 2012, 11am EDT: Matt Gamble on MIMV, the Minimum Information Model Vocabulary

From: Tim Clark <tim_clark@harvard.edu>
Date: Sat, 24 Mar 2012 12:00:17 -0400
Cc: Joanne Luciano <jluciano@cs.rpi.edu>, "Waard, Anita de A (ELS-NYC)" <A.dewaard@elsevier.com>, HCLS IG <public-semweb-lifesci@w3.org>, "<scidiscourse@googlegroups.com>" <scidiscourse@googlegroups.com>, "<mal@aber.ac.uk>" <mal@aber.ac.uk>, Alberto Accomazzi <aaccomazzi@cfa.harvard.edu>, "Allen, Bradley P(ELS-SDG)" <B.Allen@elsevier.com>, Sophia Ananiadou <Sophia.Ananiadou@manchester.ac.uk>, Philip Bourne <bourne@sdsc.edu>, Gully Burns <gully@usc.edu>, "Ronald (ELS-SDG) Daniel" <R.Daniel@elsevier.com>, Rahul Dave <rahuldave@gmail.com>, Alf Eaton <A.Eaton@nature.com>, Alexander Garcia Castro <alexgarciac@gmail.com>, Matthew Gamble <matthew.gamble@gmail.com>, Yolanda Gil <gil@isi.edu>, Alyssa Goodman <agoodman@cfa.harvard.edu>, Paul Groth <pgroth@gmail.com>, Tudor Groza <tudor.groza@deri.org>, "Hays, Ellen (ELS-BUR)" <E.Hays@elsevier.com>, Maryann Martone <maryann@ncmir.ucsd.edu>, David RNewman <drn05r@ecs.soton.ac.uk>, "Antony (ELS-CAM) Scerri" <A.scerri@elsevier.com>, Jack Park <jackpark@gmail.com>, Silvio Peroni <speroni@cs.unibo.it>, Steve Pettifer <steve.pettifer@manchester.ac.uk>, Philippe Rocca-Serra <proccaserra@googlemail.com>, Cartic Ramakrishnan <cartic@isi.edu>, Jodi Schneider <jodi.schneider@deri.org>, David Shotton <david.shotton@zoo.ox.ac.uk>, Kaitlin Thaney <k.thaney@digital-science.com>, Karin Verspoor <Karin.Verspoor@ucdenver.edu>, Lynette Hirschman <lynette@mitre.org>, Susanna-Assunta Sansone <sa.sansone@gmail.com>, Kees van Bochove <business@keesvanbochove.nl>, Katy Wolstencroft <katy@cs.man.ac.uk>, JunZhao Zhao <jun.zhao@zoo.ox.ac.uk>, "Taylor, Michael (ELS-OXF)" <Mi.Taylor@elsevier.com>
To: HCLS IG <public-semweb-lifesci@w3.org>
Message-Id: <2DFEE0A8-78B8-4A2C-A3BC-8D425CB9F656@harvard.edu>
Dear Colleagues:

Please join us on Monday April 2, 2012, 10am EDT / 14:00 UTC, to hear Matt Gamble of the University of Manchester School of Computer Science, present on MIMV, the Minimum Information Model Vocabulary.  

Monday April 2, 2012, 10am EDT / 14:00 UTC

 Dial-In #: +1.617.761.6200 (Cambridge, MA)
Dial-In #: +33.4.26.46.79.03 (Paris, France)
Dial-In #: +44.203.318.0479 (London, UK)
Participant Access Code: 42572 ("HCLS2")
IRC Channel: irc.w3.org port 6665 channel #HCLS2 use IRC direct link or (see W3C IRC page for details, or see Web IRC)
Mibbit quick start: Click on mibbit for instant IRC access
Duration: 1hr

Tim Clark
Director of Informatics, MassGeneral Institute for Neurodegenerative Disease
Instructor in Neurology, Harvard Medical School
65 Landsdowne St, 2nd floor
Cambridge MA 02139 USA



Begin forwarded message:

> Resent-From: public-semweb-lifesci@w3.org
> From: Tim Clark <tim.clark@rcn.com>
> Subject: Re: HCLS SciDiscourse call Monday January 23, 2012, Use Case overview; Talk on DOMEO planned for January 30
> Date: January 30, 2012 1:34:14 PM EST
> To: Joanne Luciano <jluciano@gmail.com>
> Cc: "Waard, Anita de A (ELS-NYC)" <A.dewaard@elsevier.com>, HCLS IG <public-semweb-lifesci@w3.org>, "<scidiscourse@googlegroups.com>" <scidiscourse@googlegroups.com>, "<mal@aber.ac.uk>" <mal@aber.ac.uk>, Alberto Accomazzi <aaccomazzi@cfa.harvard.edu>, "Allen, Bradley P(ELS-SDG)" <B.Allen@elsevier.com>, Sophia Ananiadou <Sophia.Ananiadou@manchester.ac.uk>, Philip Bourne <bourne@sdsc.edu>, Gully Burns <gully@usc.edu>, "Daniel, Ronald (ELS-SDG)" <R.Daniel@elsevier.com>, Rahul Dave <rahuldave@gmail.com>, Alf Eaton <A.Eaton@nature.com>, Alexander Garcia Castro <alexgarciac@gmail.com>, Matthew Gamble <matthew.gamble@gmail.com>, Yolanda Gil <gil@isi.edu>, Alyssa Goodman <agoodman@cfa.harvard.edu>, Paul Groth <pgroth@gmail.com>, Tudor Groza <tudor.groza@deri.org>, "Hays, Ellen (ELS-BUR)" <E.Hays@elsevier.com>, Maryann Martone <maryann@ncmir.ucsd.edu>, David RNewman <drn05r@ecs.soton.ac.uk>, "Scerri, Antony (ELS-CAM)" <A.scerri@elsevier.com>, Jack Park <jackpark@gmail.com>, Silvio Peroni <speroni@cs.unibo.it>, Steve Pettifer <steve.pettifer@manchester.ac.uk>, Philippe Rocca-Serra <proccaserra@googlemail.com>, Cartic Ramakrishnan <cartic@isi.edu>, Jodi Schneider <jodi.schneider@deri.org>, David Shotton <david.shotton@zoo.ox.ac.uk>, Kaitlin Thaney <k.thaney@digital-science.com>, Karin Verspoor <Karin.Verspoor@ucdenver.edu>, Lynette Hirschman <lynette@mitre.org>, Susanna-Assunta Sansone <sa.sansone@gmail.com>, Kees van Bochove <business@keesvanbochove.nl>, Katy Wolstencroft <katy@cs.man.ac.uk>, JunZhao <jun.zhao@zoo.ox.ac.uk>, "Taylor, Michael (ELS-OXF)" <Mi.Taylor@elsevier.com>
> 
> For those of you who could not make today's very interesting Sci Discourse call, I am attaching a link to the slides.
> 
> http://www.slideshare.net/paolociccarese/domeo-and-text-mining
> 
> Best
> 
> Tim
> 
> 
> On Jan 30, 2012, at 9:53 AM, Joanne Luciano wrote:
> 
>> Hi, 
>> 
>> We have been on winter break here, so nothing to report at the moment. I have been working on other projects (including CSHALS from the chairing and tutorial side). I look forward to updating next time. Unfortunately I cannot make the call today.
>> 
>> Happy New Year!
>> 
>> Kind regards,
>> 
>> Joanne
>> 
>> Sent from my iPhone
>> 
>> On Jan 23, 2012, at 11:23 AM, "Waard, Anita de A (ELS-NYC)" <A.dewaard@elsevier.com> wrote:
>> 
>>> Please find enclosed the notes to our call. For a hyperlinked version, see  http://www.w3.org/wiki/HCLSIG/SWANSIOC/Actions/RhetoricalStructure/meetings/20120103
>>> 
>>>> 
>>> Notes:
>>> 
>>> 1. Use case 1 status, Rich Boyce:
>>> 
>>>  * gearing up for the C-SHALS presentation
>>>  * in abstract we talked about a conceptual prototype for 2 packages, this is now available
>>>  * Now going through the process of building a linked data set and revamping prototype in Linked Data standard
>>>  * Current prototype: what does Package Insert enhanced with scientific literature look like? Now, want to mark up a paper, take annotations and bring into Linked Data graph and link to section in Package insert for two drugs
>>>  * code will be posted here
>>>  * Project page for the code here
>>>  * Road map with milestones, are dividing among themselves
>>>  * Now have all the structured product labels in the code repository and scientific articles for 2 drugs at C-SHALS
>>>  * Met with Pieder Caduff to discuss XPharm/Pharmapendium to discuss details; figuring out protocol for this
>>>  * Should talk to Provenance group; as Elsevier opens up Pharmapendium we should bring in some provenance markup to identify where data comes from - is Satellite standard compliant with new provenance standard? 
>>> 
>>> Anita to do: look at Satellite and PROV overlap Rich: at noon I will have a few full-text annotated with Sapienta will send it around
>>> 
>>> 2. Use case 2 , David Shotton -
>>> 
>>>  * Stripped out information re. infectious disease - diagram mibio.png (sent around earlier)
>>>  * Form to fill in is here can generate a report in the middi format in XML; recently at a hackathon people repurposed this format to describe cancer research papers
>>>  * Now want to share with rest of the team and see what next steps are 
>>> 
>>> Q Anita how can this be used? A: david: can accompany article as a supplementary file; can be published separately e.g. as a pointer to the article or as a submission to e.g. Dryad or other data repository
>>> 
>>>  * Questions: 1) Are these the right things you want to add 2) How/where is it added?
>>>  * Anita: suggest also looking at Rutgers research data metadata 
>>> 
>>> 3. Use case 3
>>> 
>>>  * No news, ask Joanne Luciano for update next general meeting 
>>> 
>>> 4. Next calls:
>>> 
>>>  * We'll keep 4-week general call schedule
>>>  * Next general call February 20: Anita will invite someone from the PROV group to present [1]
>>>  * Next week (January 30, 2012): Paolo Ciccarese will present re. DOMEO 
>>>> 
>>> 
>>> Best, 
>>> 
>>> - Anita.  
>>> 
>>> Anita de Waard
>>> Disruptive Technologies Director, Elsevier Labs
>>> http://elsatglabs.com/labs/anita/
>>> a.dewaard@elsevier.com
>>> 
>>> 
>>> 
>>> -----Original Message-----
>>> From: Waard, Anita de A (ELS-NYC)
>>> Sent: Fri 1/20/2012 16:30
>>> To: Waard, Anita de A (ELS-NYC); Tim Clark; HCLS IG; scidiscourse@googlegroups.com; mal@aber.ac.uk
>>> Cc: Alberto Accomazzi; Allen, Bradley P (ELS-SDG); Sophia Ananiadou; Philip Bourne; Gully Burns; Daniel, Ronald (ELS-SDG); Rahul Dave; Alf Eaton; Alexander Garcia Castro; Matthew Gamble; Yolanda Gil; Alyssa Goodman; Paul Groth; Tudor Groza; Hays, Ellen (ELS-BUR); Maryann Martone; David R Newman; Scerri, Antony (ELS-CAM); Jack Park; Silvio Peroni; Steve Pettifer; Philippe Rocca-Serra; Cartic Ramakrishnan; Jodi Schneider; David Shotton; Kaitlin Thaney; Karin Verspoor; Lynette Hirschman; Susanna-Assunta Sansone; Kees van Bochove; Katy Wolstencroft; Jun Zhao; Taylor, Michael  (ELS-OXF)
>>> Subject: HCLS SciDiscourse call Monday January 23, 2012, Use Case overview; Talk on DOMEO planned for January 30
>>> 
>>> Dear all, 
>>> 
>>> I cordially invite you to Monday's scientific discourse call, where we will do a status update on the three use cases we are working on. 
>>> 
>>> For links, more details and dial-in info see the wiki, and below:
>>> http://www.w3.org/wiki/HCLSIG/SWANSIOC/Actions/RhetoricalStructure/meetings/20120103
>>> 
>>> Dial-in & IRC Information:
>>> 
>>> Dial-In #: +1.617.761.6200 (Cambridge, MA)
>>> Dial-In #: +33.4.26.46.79.03 (Paris, France)
>>> Dial-In #: +44.203.318.0479 (London, UK)
>>> Participant Access Code: 42572 ("HCLS2")
>>> IRC Channel: irc.w3.org port 6665 channel #HCLS2 use IRC direct link or (see W3C IRC page for details, or see Web IRC)
>>> Mibbit quick start: Click on mibbit for instant IRC access
>>> Duration: 1hr
>>> 
>>> Next week, on January 30, Paolo Ciccarese will present his work on the DOMEO web annotation toolkit. The Domeo Web Annotation Toolkit provides several important items of common infrastructure that can help support the textmining community by offering: 
>>> - Shared results repository with selective sharing (personal, group, public)
>>> - Standardized serialization and export of results in Annotation Ontology RDF/XML
>>> - Results injection and contextualization on any web page
>>> - Common curation, annotation and comparison user interface
>>> - Web service interfaces
>>> 
>>> His talk and demo will discuss current facilities and future plans for Domeo relating to specifically to textmining use cases. Also, Paolo and a representative from the Apache/Clerezza community will discuss DOMEO's integration with the Apache framework. 
>>> 
>>> Best, 
>>> 
>>> - Anita.  
>>> 
>>> Anita de Waard
>>> Disruptive Technologies Director, Elsevier Labs
>>> http://elsatglabs.com/labs/anita/
>>> a.dewaard@elsevier.com
>>> 
>>> 
>>> 
>>> 
>>> 
>>> 
>>> 
>>> 
>>> 
>>> 
>>> Elsevier B.V. Registered Office: Radarweg 29, 1043 NX Amsterdam, The Netherlands, Registration No. 33156677 (The Netherlands)
>>> 
>>> 
> 
> 
> 
> 



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Received on Saturday, 24 March 2012 16:00:50 GMT

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