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Re: Michel Dumontier @ Systems Biology Telco - today at 11AM EST

From: Helena Deus <helenadeus@gmail.com>
Date: Mon, 25 Jun 2012 17:30:40 +0100
Message-ID: <CAPkJ_9nze3cbAY8gCLSpkg=VO9t8uL-9zP5i_9oiuujp6GJkTQ@mail.gmail.com>
To: sarala@ebi.ac.uk
Cc: Michel Dumontier <michel.dumontier@gmail.com>, Michael Hucka <mhucka@caltech.edu>, HCLS hcls <public-semweb-lifesci@w3.org>, "<Laleh.Kazemzadeh@deri.org>" <Laleh.Kazemzadeh@deri.org>
Hello Sarala,

This is great - naive question: is there a reason why you didn't go with
the biopax representation?
Best,
Lena

On Mon, Jun 25, 2012 at 10:46 AM, <sarala@ebi.ac.uk> wrote:

> Hi Lena,
>
> I'm working on semantic interoperability of data and models. As part of
> this work, I have converted all curated sbml models in biomodels into RDF.
> It would be good to see what you have done, may be see were we can
> collaborate. I'm in the process of documenting my work but you can find
> the rdf models and the schema at
> https://sites.google.com/site/ricordowp4/file-cabinet/sbmltordf. These
> models are stored in a RDF store and can be queried via ws eg.
> http://wwwdev.ebi.ac.uk/ricordo-rdfstore-ws/service/search/getResources. A
> bit more documentation on this can be found at
> https://github.com/sarala/ricordo-rdfstore-ws. I will be uploading the
> converter code to github soon. Please let me know if your work is
> available to access online.
>
> Cheers,
> Sarala
>
> > Mike,
> >   This might be of interest to harmony/combine folks - which mailing
> lists
> > might Lena post to do indicate she will be presenting on this topic?
> >
> > m.
> >
> > On Fri, Jun 22, 2012 at 12:09 PM, Me <helenadeus@gmail.com> wrote:
> >
> >> Hi Michael,
> >>
> >> My plan for the next telco is to have a much MUCH  more hands-on focus
> >> than what we've had so far. Me and Laleh (my PhD student) are creating
> >> RDF
> >> representations of SBML models so that we can visualize with google
> >> fusion
> >> tables. We hope to have something to show by next telco.
> >>
> >> Best,
> >> Lena
> >>
> >>
> > --
> > Michel Dumontier
> > Associate Professor of Bioinformatics, Carleton University
> > Chair, W3C Semantic Web for Health Care and the Life Sciences Interest
> > Group
> > http://dumontierlab.com
> >
>
>


-- 
Helena F. Deus
Post-Doctoral Researcher at DERI/NUIG
http://lenadeus.info/
Received on Monday, 25 June 2012 16:31:30 GMT

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