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Re: Michel Dumontier @ Systems Biology Telco - today at 11AM EST

From: <sarala@ebi.ac.uk>
Date: Mon, 25 Jun 2012 10:46:11 +0100
Message-ID: <00433e1887306bab98628daed5538965.squirrel@webmail.ebi.ac.uk>
To: "Michel Dumontier" <michel.dumontier@gmail.com>
Cc: "Me" <helenadeus@gmail.com>, "Michael Hucka" <mhucka@caltech.edu>, "HCLS hcls" <public-semweb-lifesci@w3.org>
Hi Lena,

I'm working on semantic interoperability of data and models. As part of
this work, I have converted all curated sbml models in biomodels into RDF.
It would be good to see what you have done, may be see were we can
collaborate. I'm in the process of documenting my work but you can find
the rdf models and the schema at
https://sites.google.com/site/ricordowp4/file-cabinet/sbmltordf. These
models are stored in a RDF store and can be queried via ws eg.
http://wwwdev.ebi.ac.uk/ricordo-rdfstore-ws/service/search/getResources. A
bit more documentation on this can be found at
https://github.com/sarala/ricordo-rdfstore-ws. I will be uploading the
converter code to github soon. Please let me know if your work is
available to access online.

Cheers,
Sarala

> Mike,
>   This might be of interest to harmony/combine folks - which mailing lists
> might Lena post to do indicate she will be presenting on this topic?
>
> m.
>
> On Fri, Jun 22, 2012 at 12:09 PM, Me <helenadeus@gmail.com> wrote:
>
>> Hi Michael,
>>
>> My plan for the next telco is to have a much MUCH  more hands-on focus
>> than what we've had so far. Me and Laleh (my PhD student) are creating
>> RDF
>> representations of SBML models so that we can visualize with google
>> fusion
>> tables. We hope to have something to show by next telco.
>>
>> Best,
>> Lena
>>
>>
> --
> Michel Dumontier
> Associate Professor of Bioinformatics, Carleton University
> Chair, W3C Semantic Web for Health Care and the Life Sciences Interest
> Group
> http://dumontierlab.com
>
Received on Tuesday, 26 June 2012 11:59:01 GMT

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