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Re: Fwd: [bioportal-announce] BioPortal 3.7 Released

From: Kingsley Idehen <kidehen@openlinksw.com>
Date: Fri, 13 Apr 2012 16:10:10 -0400
Message-ID: <4F888822.8000108@openlinksw.com>
To: "M. Scott Marshall" <mscottmarshall@gmail.com>
CC: public-semweb-lifesci@w3.org
On 4/12/12 6:12 PM, M. Scott Marshall wrote:
> Hi Kingsley,
>
> Quick tip from Trish:
>
> Using the example, add the API Key to this line:
> SERVICE<http://sparql.bioontology.org/sparql?apikey=YourAPIKey
>
> NCBO started to require a (free on request) APIKey to use their
> services some time ago (I think that the announcement was sent to this
> list). It helps them track how their services are being used and, of
> course, prevents Denial of Service attacks. Come to think of it, they
> might be interested in considering how to use WebID instead.
>
> Hope that helps,
> Scott

Okay!

Found the API Key following account creation.

Link: http://bioportal.bioontology.org/accounts/new .

Kingsley
>
> On Thu, Apr 12, 2012 at 10:33 PM, Kingsley Idehen
> <kidehen@openlinksw.com>  wrote:
>> On 4/10/12 5:06 PM, M. Scott Marshall wrote:
>>> Note that the BioPortal SPARQL endpoint has moved into beta. It has a
>>> (web) user interface, documentation, and example queries:
>>>
>>> http://sparql.bioontology.org/
>>>
>>> Nice!
>>>
>>> -Scott
>>
>> Do I need an API Key to access the SPARQL endpoint?
>>
>> Please try this SPARQL-FED from: http://uriburner.com/sparql .
>>
>> PREFIX meta:<http://bioportal.bioontology.org/metadata/def/>
>> SELECT DISTINCT *
>> WHERE { SERVICE<http://sparql.bioontology.org/sparql>
>>           {
>>             SELECT DISTINCT ?vrtID ?graph
>>             WHERE {
>>                     ?vrtID meta:hasVersion ?version .
>>                     ?version meta:hasDataGraph ?graph .
>>                   }
>>            LIMIT 5
>>          }
>>       }
>>
>>
>> Actual SPARQL Protocol URL: http://uriburner.com/c/IHLEVT .
>>
>> It returns: 403 FORBIDEN - Apikey not provided .
>>
>> Am I doing something wrong e.g., not actually talking to a SPARQL endpoint
>> etc?
>>
>>
>> Kingsley
>>
>>> ---------- Forwarded message ----------
>>> From: Ray Fergerson<ray.fergerson@stanford.edu>
>>> Date: Tue, Apr 10, 2012 at 10:01 PM
>>> Subject: [bioportal-announce] BioPortal 3.7 Released
>>> To: announce@bioontology.org
>>>
>>>
>>> We are pleased to announce the release of BioPortal 3.7. The major new
>>> features in this release are:
>>>
>>>
>>>
>>> ·         The term search web service and UI now supports some simple
>>> Boolean logic. The format is backwards compatible with our previous
>>> format so entering “heart attack” still results in terms which contain
>>> both words (a logical AND). Negation is indicated with a minus sign
>>> prefix (as in Google search). For example, searching on “heart attack
>>> –fear –anxiety” returns terms containing both “heart” and “attack” but
>>> not those that refer to a “fear of a heart attack” or “anxiety about a
>>> heart attack”. A logical OR is achieved by enclosing words in
>>> parenthesis. For example “(heart attack)” returns terms which contain
>>> either “heart” or “attack”. *
>>>
>>>
>>>
>>> ·         We have regenerated all lexical mappings (“LOOM mappings”)
>>> between all terms in all ontologies. The mapping algorithm creates a
>>> mapping between two terms if the names of the two terms are identical
>>> except for case and spacing. LOOM mappings are created between terms
>>> if there is a match between the preferred name of one term and the
>>> preferred name or synonym of another term. *
>>>
>>>
>>>
>>> ·         We now have a beta version of an RDF triple store up and
>>> available for use. (The alpha version is no longer available.) This
>>> service provides direct SPARQL access to the ontologies in BioPortal.
>>> A demonstration user interface with SPARQL examples is available at
>>> http://sparql.bioontology.org. This triple store contains all
>>> ontologies available in BioPortal (updated nightly). *
>>>
>>> * This item was requested via the User Support mailing list and the
>>> NCBO User Group. Thank you for your comments and suggestions!
>>>
>>> Ray
>>>
>>>
>>>
>>>
>>> _______________________________________________
>>> bioportal-announce mailing list
>>> bioportal-announce@lists.stanford.edu
>>> https://mailman.stanford.edu/mailman/listinfo/bioportal-announce
>>>
>>>
>>
>> --
>>
>> Regards,
>>
>> Kingsley Idehen
>> Founder&    CEO
>> OpenLink Software
>> Company Web: http://www.openlinksw.com
>> Personal Weblog: http://www.openlinksw.com/blog/~kidehen
>> Twitter/Identi.ca handle: @kidehen
>> Google+ Profile: https://plus.google.com/112399767740508618350/about
>> LinkedIn Profile: http://www.linkedin.com/in/kidehen


-- 

Regards,

Kingsley Idehen	
Founder&  CEO
OpenLink Software
Company Web: http://www.openlinksw.com
Personal Weblog: http://www.openlinksw.com/blog/~kidehen
Twitter/Identi.ca handle: @kidehen
Google+ Profile: https://plus.google.com/112399767740508618350/about
LinkedIn Profile: http://www.linkedin.com/in/kidehen








Received on Friday, 13 April 2012 20:10:35 GMT

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