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Re: Fwd: [bioportal-announce] BioPortal 3.7 Released

From: Michel Dumontier <michel.dumontier@gmail.com>
Date: Fri, 13 Apr 2012 14:09:46 -0600
Message-ID: <CALcEXf6jq5_MVM_GB5R_FZmgDHK_bgTKcVtG-yvgD-Qx6G_bdA@mail.gmail.com>
To: Kingsley Idehen <kidehen@openlinksw.com>
Cc: public-semweb-lifesci@w3.org
Just register to get an account on bioportal - the apikey will be listed on
the account details:

http://bioportal.bioontology.org/login

m.

On Fri, Apr 13, 2012 at 2:05 PM, Kingsley Idehen <kidehen@openlinksw.com>wrote:

> On 4/12/12 6:12 PM, M. Scott Marshall wrote:
>
>> Hi Kingsley,
>>
>> Quick tip from Trish:
>>
>> Using the example, add the API Key to this line:
>> SERVICE<http://sparql.**bioontology.org/sparql?apikey=**YourAPIKey<http://sparql.bioontology.org/sparql?apikey=YourAPIKey>
>>
>> NCBO started to require a (free on request) APIKey to use their
>> services some time ago (I think that the announcement was sent to this
>> list). It helps them track how their services are being used and, of
>> course, prevents Denial of Service attacks. Come to think of it, they
>> might be interested in considering how to use WebID instead.
>>
>
> Is there a link to the place where I obtain an API Key?
>
> Kingsley
>
>
>> Hope that helps,
>> Scott
>>
>> On Thu, Apr 12, 2012 at 10:33 PM, Kingsley Idehen
>> <kidehen@openlinksw.com>  wrote:
>>
>>> On 4/10/12 5:06 PM, M. Scott Marshall wrote:
>>>
>>>> Note that the BioPortal SPARQL endpoint has moved into beta. It has a
>>>> (web) user interface, documentation, and example queries:
>>>>
>>>> http://sparql.bioontology.org/
>>>>
>>>> Nice!
>>>>
>>>> -Scott
>>>>
>>>
>>> Do I need an API Key to access the SPARQL endpoint?
>>>
>>> Please try this SPARQL-FED from: http://uriburner.com/sparql .
>>>
>>> PREFIX meta:<http://bioportal.**bioontology.org/metadata/def/<http://bioportal.bioontology.org/metadata/def/>
>>> >
>>> SELECT DISTINCT *
>>> WHERE { SERVICE<http://sparql.**bioontology.org/sparql<http://sparql.bioontology.org/sparql>
>>> >
>>>          {
>>>            SELECT DISTINCT ?vrtID ?graph
>>>            WHERE {
>>>                    ?vrtID meta:hasVersion ?version .
>>>                    ?version meta:hasDataGraph ?graph .
>>>                  }
>>>           LIMIT 5
>>>         }
>>>      }
>>>
>>>
>>> Actual SPARQL Protocol URL: http://uriburner.com/c/IHLEVT .
>>>
>>> It returns: 403 FORBIDEN - Apikey not provided .
>>>
>>> Am I doing something wrong e.g., not actually talking to a SPARQL
>>> endpoint
>>> etc?
>>>
>>>
>>> Kingsley
>>>
>>>  ---------- Forwarded message ----------
>>>> From: Ray Fergerson<ray.fergerson@**stanford.edu<ray.fergerson@stanford.edu>
>>>> >
>>>> Date: Tue, Apr 10, 2012 at 10:01 PM
>>>> Subject: [bioportal-announce] BioPortal 3.7 Released
>>>> To: announce@bioontology.org
>>>>
>>>>
>>>> We are pleased to announce the release of BioPortal 3.7. The major new
>>>> features in this release are:
>>>>
>>>>
>>>>
>>>> ·         The term search web service and UI now supports some simple
>>>> Boolean logic. The format is backwards compatible with our previous
>>>> format so entering “heart attack” still results in terms which contain
>>>> both words (a logical AND). Negation is indicated with a minus sign
>>>> prefix (as in Google search). For example, searching on “heart attack
>>>> –fear –anxiety” returns terms containing both “heart” and “attack” but
>>>> not those that refer to a “fear of a heart attack” or “anxiety about a
>>>> heart attack”. A logical OR is achieved by enclosing words in
>>>> parenthesis. For example “(heart attack)” returns terms which contain
>>>> either “heart” or “attack”. *
>>>>
>>>>
>>>>
>>>> ·         We have regenerated all lexical mappings (“LOOM mappings”)
>>>> between all terms in all ontologies. The mapping algorithm creates a
>>>> mapping between two terms if the names of the two terms are identical
>>>> except for case and spacing. LOOM mappings are created between terms
>>>> if there is a match between the preferred name of one term and the
>>>> preferred name or synonym of another term. *
>>>>
>>>>
>>>>
>>>> ·         We now have a beta version of an RDF triple store up and
>>>> available for use. (The alpha version is no longer available.) This
>>>> service provides direct SPARQL access to the ontologies in BioPortal.
>>>> A demonstration user interface with SPARQL examples is available at
>>>> http://sparql.bioontology.org. This triple store contains all
>>>> ontologies available in BioPortal (updated nightly). *
>>>>
>>>> * This item was requested via the User Support mailing list and the
>>>> NCBO User Group. Thank you for your comments and suggestions!
>>>>
>>>> Ray
>>>>
>>>>
>>>>
>>>>
>>>> ______________________________**_________________
>>>> bioportal-announce mailing list
>>>> bioportal-announce@lists.**stanford.edu<bioportal-announce@lists.stanford.edu>
>>>> https://mailman.stanford.edu/**mailman/listinfo/bioportal-**announce<https://mailman.stanford.edu/mailman/listinfo/bioportal-announce>
>>>>
>>>>
>>>>
>>> --
>>>
>>> Regards,
>>>
>>> Kingsley Idehen
>>> Founder&    CEO
>>> OpenLink Software
>>> Company Web: http://www.openlinksw.com
>>> Personal Weblog: http://www.openlinksw.com/**blog/~kidehen<http://www.openlinksw.com/blog/~kidehen>
>>> Twitter/Identi.ca handle: @kidehen
>>> Google+ Profile: https://plus.google.com/**112399767740508618350/about<https://plus.google.com/112399767740508618350/about>
>>> LinkedIn Profile: http://www.linkedin.com/in/**kidehen<http://www.linkedin.com/in/kidehen>
>>>
>>
>>
>
> --
>
> Regards,
>
> Kingsley Idehen
> Founder&  CEO
> OpenLink Software
> Company Web: http://www.openlinksw.com
> Personal Weblog: http://www.openlinksw.com/**blog/~kidehen<http://www.openlinksw.com/blog/~kidehen>
> Twitter/Identi.ca handle: @kidehen
> Google+ Profile: https://plus.google.com/**112399767740508618350/about<https://plus.google.com/112399767740508618350/about>
> LinkedIn Profile: http://www.linkedin.com/in/**kidehen<http://www.linkedin.com/in/kidehen>
>
>
>
>
>
>
>


-- 
Michel Dumontier
Associate Professor of Bioinformatics, Carleton University
Chair, W3C Semantic Web for Health Care and the Life Sciences Interest Group
http://dumontierlab.com
Received on Friday, 13 April 2012 20:10:36 GMT

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