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Re: Minimum information about a mutation

From: Susanna-Assunta Sansone <sa.sansone@gmail.com>
Date: Wed, 25 May 2011 17:08:10 +0100
Message-ID: <4DDD296A.2000705@gmail.com>
To: Jim McCusker <james.mccusker@yale.edu>
CC: w3c semweb HCLS <public-semweb-lifesci@w3.org>, Chris Taylor <chris.taylor@ebi.ac.uk>
Hi Jim,

not specifically, but if you look at the MIBBI* portal (http://mibbi.org 
<http://mibbi.org/>), Chris here cc-ed also maintains. He says that 
there are relevant part in other checklists, namely MIAPE (for the assay 
descriptions), MIAPAR for reagents and TAP assays, MIPFE (and perhaps 
STRENDA wrt enzyme activity if any) for any functional evaluation of 
variants. But beyond that, to fill in gaps, come join MIBBI!


* note that this has now evolved in the BioSharing catalogue of 
standards, if of interest (work in progress at biosharing.org)

On 25/05/2011 16:29, Jim McCusker wrote:
> Does anyone know of a MIAME-like standard for what should be included
> in a dataset of amino acid-level mutations?
> Thanks,
> Jim

Susanna-Assunta Sansone, PhD
Team Leader
University of Oxford

Received on Wednesday, 25 May 2011 16:08:40 UTC

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