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RE: My task from last week: Semantic free identifiers

From: Vagnoni,Matthew M <MMVagnoni@mdanderson.org>
Date: Mon, 20 Jun 2011 13:26:54 -0500
To: 'James Malone' <malone@ebi.ac.uk>, HCLS <public-semweb-lifesci@w3.org>
Message-ID: <EFA3516724DFF7419395367D7ADCE63310F1DCD033@DCPWVMBXC1VS2.mdanderson.edu>
Consider this: 

SELECT ?name
WHERE { ?s :contains :MRN; ?s a :Patient; rdfs:label ?name}


SELECT ?name
                ?s ?p ?o; rdfs:label ?name.
                ?p rdfs:label "contains".
                ?o rdfs:label "Master Record Number".
                ?s a ?type.
                ?type rdfs:label "Patient".

Except the above would introduce the possibility of querying from the wrong graph (when importing multiple graphs), not be supported by autocomplete/lookup features, and result in a huge query performance degradation.  This also assumes you know the correct punctuation, spelling, etc.  Otherwise you can use a FILTER expression and REGEX, but that is even slower and requires even more typing.


PREFIX mrn: <http://www.mdanderson.org/clinical#fge29430s>
PREFIX contains: <http://www.mdanderson.org/clinical#fdk30929a>
PREFIX patient: <http://www.mdanderson.org/clinical#jkl23902c>
SELECT ?label
WHERE { ?s contains: mrn:; a patient:; rdfs:label ?name}

This final method is being proposed.  Obviously, you can see this just hides the problem and makes it even more difficult to maintain.  Now the semantic references are even more difficult to maintain, because they are stored as plain text in a file or sparql query.  You cannot query for them or consult metadata about them.  It introduces more typing and doesn't provide any real improvement over the first case (using semantic identifiers) because you are using semantic identifiers but instead of being URIs they are now SPARQL Prefixes!  

Someone might come along still and use MRN to mean Magnetic Resonance Neuroimaging instead of Master Record Number, but at least they can easily find MRN in the model by doing a simple sparql query: 
SELECT ?p ?o
WHERE {:MRN ?p ?o}

Or they can quickly jump to that concept by referring to the URI.  In TopBraid Composer there is a text box where you can put a URI in and it will automatically jump to that resource.  
Received on Monday, 20 June 2011 18:28:33 UTC

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