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Re: Kickoff meeting - W3C HCLS Scientific Discourse + Data + Experiment

From: Jim McCusker <james.mccusker@yale.edu>
Date: Mon, 22 Mar 2010 11:55:58 -0400
Message-ID: <68084f3e1003220855y12ed4092u3a2aebf5ac7042b6@mail.gmail.com>
To: Helen Parkinson <parkinson@ebi.ac.uk>
Cc: Susanna-Assunta Sansone <sansone@ebi.ac.uk>, Jun Zhao <jun.zhao@zoo.ox.ac.uk>, Tim Clark <tim_clark@harvard.edu>, HCLS IG <public-semweb-lifesci@w3.org>, David R Newman <drn05r@ecs.soton.ac.uk>, Matthew Gamble <matthew.gamble@gmail.com>, Carole Goble <carole.goble@manchester.ac.uk>, David DeRoure <dder@ecs.soton.ac.uk>, kei cheung <kei.cheung@yale.edu>, "M. Scott Marshall" <marshall@science.uva.nl>
How complete is this mapping? I'm willing to change magetab2magerdf
over before the official 1.0 release if it's ready...

Jim

On Monday, March 22, 2010, Helen Parkinson <parkinson@ebi.ac.uk> wrote:
> Susanna is correct, MGED ontology is being phased out. Copying in Jie Zheng from U Penn who has done much of the work mapping OBI to MGED, and requesting new terms for OBI
>
> best
> Helen
>
> Susanna-Assunta Sansone wrote:
>
>> integration of existing ontologies with some gap filling. > Initial integration targets will be SWAN, myExperiment, MGED and ResearchObjects.
> Has this group considered OBI (http://obi-ontology.org/page/Main_Page)? It includes and will replace MGED ontology.
> Thanks,
> Susanna
>
>
> Jun Zhao wrote:
>
> Dear all,
>
> The code for today's call is 4257.
>
> We are on the IRC channel #hcls.
>
> We have one hour sharp since biordf call just follows us.
>
> cheers,
>
> Jun
>
> Tim Clark wrote:
>
> Dear Colleagues
>
> This is to announce the kickoff meeting for our new HCLS Scientific Discourse task, "Discourse + Data + Experiment ", chaired by Sudeshna Das (sudeshna_das at harvard.edu<http://harvard.edu>), a a joint task with HCLS BioRDF's MicroArray Use Case (Kei Cheung).
>
> The objective of this task is to provide a general semantic model for linking experimental data, workflows, scientific claims and publications.  The approach will be via stepwise integration of existing ontologies with some gap filling.  Initial integration targets will be SWAN, myExperiment, MGED and ResearchObjects.
>
> Also, beginning with this call, all Scientific Discourse calls will use a single timeslot, Mondays at 10am Eastern time, which will be shared on a rotating basis between subtasks.
>
> ** Note that Eastern time is currently GMT -4 due to the US's  early shift to Daylight SavingTime. **
>
> Sudeshna Das will provide further details before the call.
>
> Regards,
>
> Tim Clark
>
> Conference Details
>
>  *   Date of Call: Monday Mar 22, 2010
>  *   Time of Call: 10:00am Eastern Time
>  *   Dial-In #: +1.617.761.6200 (Cambridge, MA)
>  *   Dial-In #: +33.4.89.06.34.99 (Nice, France)
>  *   Dial-In #: +44.117.370.6152 (Bristol, UK)
>  *   Participant Access Code: 42572 ("HCLS2")
>  *   IRC Channel: irc.w3.org<http://irc.w3.org> port 6665 channel #HCLS (see W3C IRC page<http://www.w3.org/Project/IRC/> for details, or see Web IRC<http://cgi.w3.org/member-bin/irc/irc.cgi>)
>  *   Duration: ~1 hour
>  *   Convener: Sudeshna Das
>  *   Notes: TDB
>
> [edit<http://esw.w3.org/index.php?title=HCLSIG/SWANSIOC/Meetings/2010-3-22_Conference_Call&action=edit&section=2>]Proposed Agenda
>
>  *   Discourse+Data+Experiment Kickoff Meeting
>  *   AOB
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-- 
Jim
--
Jim McCusker
Programmer Analyst
Krauthammer Lab, Pathology Informatics
Yale School of Medicine
james.mccusker@yale.edu | (203) 785-6330
http://krauthammerlab.med.yale.edu

PhD Student
Tetherless World Constellation
Rensselaer Polytechnic Institute
mccusj@cs.rpi.edu
http://tw.rpi.edu
Received on Monday, 22 March 2010 15:56:32 GMT

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