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Re: BioRDF Telcon

From: mdmiller <mdmiller53@comcast.net>
Date: Tue, 24 Nov 2009 07:59:37 -0800
Message-ID: <95A4850F71244DDAAB46190B0D7BE706@mmPC>
To: "Kei Cheung" <kei.cheung@yale.edu>, "HCLS" <public-semweb-lifesci@w3.org>
hi all,

(from the minutes)

"Yolanda/Kei/Scott: semantic annotation/description of workflow would enable 
the retrieval of data relevant to that workflow (i.e. data that could be 
used to populate that workflow for a different experimental scenario)"

what is typically in a MAGE-TAB/MAGE-ML document are the protocols for how 
the source was processed into the extract then how the hybridization, 
feature extraction, error and normalization were performed.  these are 
interesting and different protocols can cause differences at this level but 
it is pretty much a known art and usually not of too much interest or 
variability.

what is usually missing from those documents, along with the final gene 
list, is how that gene list was obtained, what higher level analysis was 
used, that is generally only in the paper unfortunately.

cheers,
michael
.
----- Original Message ----- 
From: "Kei Cheung" <kei.cheung@yale.edu>
To: "HCLS" <public-semweb-lifesci@w3.org>
Sent: Monday, November 23, 2009 1:27 PM
Subject: Re: BioRDF Telcon


> Today's BioRDF minutes are available at the following:
>
> http://esw.w3.org/topic/HCLSIG_BioRDF_Subgroup/Meetings/2009/11-23_Conference_Call
>
> Thanks to Rob for scribing.
>
> Cheers,
>
> -Kei
>
> Kei Cheung wrote:
>> This is a reminder that the next BioRDF telcon call will be held at 11 am 
>> EDT (5 pm CET) on Monday, November 23 (see details below).
>>
>> Cheers,
>>
>> -Kei
>>
>> == Conference Details ==
>> * Date of Call: Monday November 23, 2009
>> * Time of Call: 11:00 am Eastern Time
>> * Dial-In #: +1.617.761.6200 (Cambridge, MA)
>> * Dial-In #: +33.4.89.06.34.99 (Nice, France)
>> * Dial-In #: +44.117.370.6152 (Bristol, UK)
>> * Participant Access Code: 4257 ("HCLS")
>> * IRC Channel: irc.w3.org port 6665 channel #HCLS (see W3C IRC page for 
>> details, or see Web IRC), Quick Start: Use 
>> http://www.mibbit.com/chat/?server=irc.w3.org:6665&channel=%23hcls for 
>> IRC access.
>> * Duration: ~1 hour
>> * Frequency: bi-weekly
>> * Convener: Kei Cheung
>> * Scribe: to-be-determined
>>
>> == Agenda ==
>> * Roll call & introduction (Kei)
>> * RDF representation of microarray experiment and data (All)
>> * Provenance and workflow (All)
>>
>>
>
>
>
> 
Received on Tuesday, 24 November 2009 16:00:31 GMT

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