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Re: BioRDF Telcon

From: Kei Cheung <kei.cheung@yale.edu>
Date: Tue, 24 Nov 2009 15:16:57 -0500
To: mdmiller <mdmiller53@comcast.net>
Cc: HCLS <public-semweb-lifesci@w3.org>
Message-id: <4B0C3F39.4060707@yale.edu>
Hi Michael et al,

Thanks for pointing out the kind of metadata captured in MAGE-TAB. Yes, 
we have discussed what kind of semantic information might be needed for 
describing gene lists. In addition to recording how the gene lists were 
obtained, we might need to keep track of how these gene lists might be 
used by other people (beyond the paper).

Cheers,

-Kei

mdmiller wrote:
> hi all,
>
> (from the minutes)
>
> "Yolanda/Kei/Scott: semantic annotation/description of workflow would 
> enable the retrieval of data relevant to that workflow (i.e. data that 
> could be used to populate that workflow for a different experimental 
> scenario)"
>
> what is typically in a MAGE-TAB/MAGE-ML document are the protocols for 
> how the source was processed into the extract then how the 
> hybridization, feature extraction, error and normalization were 
> performed.  these are interesting and different protocols can cause 
> differences at this level but it is pretty much a known art and 
> usually not of too much interest or variability.
>
> what is usually missing from those documents, along with the final 
> gene list, is how that gene list was obtained, what higher level 
> analysis was used, that is generally only in the paper unfortunately.
>
> cheers,
> michael
> .
> ----- Original Message ----- From: "Kei Cheung" <kei.cheung@yale.edu>
> To: "HCLS" <public-semweb-lifesci@w3.org>
> Sent: Monday, November 23, 2009 1:27 PM
> Subject: Re: BioRDF Telcon
>
>
>> Today's BioRDF minutes are available at the following:
>>
>> http://esw.w3.org/topic/HCLSIG_BioRDF_Subgroup/Meetings/2009/11-23_Conference_Call 
>>
>>
>> Thanks to Rob for scribing.
>>
>> Cheers,
>>
>> -Kei
>>
>> Kei Cheung wrote:
>>> This is a reminder that the next BioRDF telcon call will be held at 
>>> 11 am EDT (5 pm CET) on Monday, November 23 (see details below).
>>>
>>> Cheers,
>>>
>>> -Kei
>>>
>>> == Conference Details ==
>>> * Date of Call: Monday November 23, 2009
>>> * Time of Call: 11:00 am Eastern Time
>>> * Dial-In #: +1.617.761.6200 (Cambridge, MA)
>>> * Dial-In #: +33.4.89.06.34.99 (Nice, France)
>>> * Dial-In #: +44.117.370.6152 (Bristol, UK)
>>> * Participant Access Code: 4257 ("HCLS")
>>> * IRC Channel: irc.w3.org port 6665 channel #HCLS (see W3C IRC page 
>>> for details, or see Web IRC), Quick Start: Use 
>>> http://www.mibbit.com/chat/?server=irc.w3.org:6665&channel=%23hcls 
>>> for IRC access.
>>> * Duration: ~1 hour
>>> * Frequency: bi-weekly
>>> * Convener: Kei Cheung
>>> * Scribe: to-be-determined
>>>
>>> == Agenda ==
>>> * Roll call & introduction (Kei)
>>> * RDF representation of microarray experiment and data (All)
>>> * Provenance and workflow (All)
>>>
>>>
>>
>>
>>
>>
>
>
Received on Tuesday, 24 November 2009 20:17:35 GMT

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