- From: Lee Feigenbaum <lee@thefigtrees.net>
- Date: Fri, 27 Feb 2009 11:39:20 -0500
- To: Kei Cheung <kei.cheung@yale.edu>
- CC: erant@psb.vib-ugent.be, public-semweb-lifesci hcls <public-semweb-lifesci@w3.org>
Slides from the C-SHALS HCLS tutorial(s) are available at: http://esw.w3.org/topic/HCLS/CSHALS2009/Tutorial Thanks to Susie for pulling everything together. Lee Kei Cheung wrote: > I think the slides of the HCLS tutorial session at C-SHALS might be > availlable to public. The C-SHALS organizers (e.g., Susie) con confirm. > If not, I can make my slides available through the BioRDF site. > > Thanks, > > -Kei > > Erick Antezana wrote: > >> Kei, >> >> would it be possible to get your slides? do you know if the material >> disucussed during the C-SHALS will be available? >> >> thanks, >> Erick >> >> >> >>> I gave the following neuroscience URI examples in my biordf talk at >>> C-SHALS yesterday. >>> >>> http://dbpedia.org/resource/Dopamine_receptor >>> http://purl.org/ycmi/senselab/neuron_ontology.owl#Dopaminergic_Receptor >>> http://purl.org/nif/ontology/NIF-Molecule.owl#nifext_5832 >>> >>> I pointed out that the last one might be a possible solution. There >>> might be hope. :-) >>> >>> -Kei >>> >>> >>> Alan Ruttenberg wrote: >>> >>> >>>> So I count three different sets of URIs for NCBI taxonomy so far. :( >>>> -Alan >>>> >>>> On Fri, Feb 27, 2009 at 11:37 AM, Chris Mungall <cjm@berkeleybop.org> >>>> wrote: >>>> >>>> >>>> >>>>> also.. >>>>> >>>>> part of the NCBI taxonomy is in NIF Organism: >>>>> >>>>> http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl >>>>> >>>>> See also: >>>>> >>>>> https://wiki.neuinfo.org/xwiki/bin/view/Main/NIFSTDoverview >>>>> http://neuinfo.org >>>>> >>>>> >>>>> On Feb 25, 2009, at 4:17 PM, andrea splendiani (RRes-Roth) wrote: >>>>> >>>>> >>>>> >>>>> >>>>>> Thanks! >>>>>> >>>>>> It'2 240M, but compressed is only 9. >>>>>> I wonder whether there is some architecture to transparently transfer >>>>>> compressed ontologies... >>>>>> >>>>>> Ciao, >>>>>> Andrea >>>>>> >>>>>> -----Original Message----- >>>>>> From: Chris Mungall [mailto:cjm@berkeleybop.org] >>>>>> Sent: 25 February 2009 20:53 >>>>>> To: andrea splendiani (RRes-Roth) >>>>>> Cc: public-semweb-lifesci hcls >>>>>> Subject: Re: Is there an NCBI taxonomy in OWL ? >>>>>> >>>>>> >>>>>> On Feb 25, 2009, at 11:58 AM, Andrea Splendiani wrote: >>>>>> >>>>>> >>>>>> >>>>>> >>>>>>> Hi, >>>>>>> >>>>>>> I was looking for an NCBI Taxnomoy in OWL, but I didn't find it (or >>>>>>> better, could find fragment from other projects...) >>>>>>> >>>>>>> What is strange though, is that on the obo foundry website >>>>>>> (berkeleybop.org/ontologies) there are notes on the ncbi taxonomy >>>>>>> representation in owl... but not the representation itself. >>>>>>> >>>>>>> >>>>>>> >>>>>> Temporarily dropped from the summary page but still available at the >>>>>> usual URL >>>>>> http://purl.org/obo/owl/NCBITaxon >>>>>> >>>>>> (warning: large..) >>>>>> >>>>>> >>>>>> >>>>>> >>>>>>> Does anybody have some hint about where I can fin an OWL version ? >>>>>>> Or even an RDF version ? Even better would a sparql endpoint >>>>>>> containing it... >>>>>>> >>>>>>> best, >>>>>>> Andrea Splendiani >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>> >>>>> >>>>> >>>> >>>> >>> >>> >> >> >> >> > > >
Received on Friday, 27 February 2009 16:40:29 UTC