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RE: Re : Is there an NCBI taxonomy in OWL ?

From: andrea splendiani \(RRes-Roth\) <andrea.splendiani@bbsrc.ac.uk>
Date: Fri, 27 Feb 2009 13:48:35 -0000
Message-ID: <C20D81024E1CAE4893D45B58FA0FFF6401130294@rothe2ksrv1.rothamsted.bbsrc.ac.uk>
To: "Pierre LINDENBAUM" <plindenbaum@yahoo.fr>, <public-semweb-lifesci@w3.org>
Hi, thanks.
But which is the difference between this, and using sparql on top of an inferential model ?

Ciao,
Andrea

-----Original Message-----
From: public-semweb-lifesci-request@w3.org [mailto:public-semweb-lifesci-request@w3.org] On Behalf Of Pierre LINDENBAUM
Sent: 27 February 2009 10:02
To: public-semweb-lifesci@w3.org
Subject: Re : Is there an NCBI taxonomy in OWL ?


Hi Andrea,

this is not an answer to your query but you or others might be interested by this post I wrote a few monthes ago:

http://plindenbaum.blogspot.com/2008/11/taxonomy-and-semantic-web-writing.html

In this post I wrote an extension for arq/sparql returning all the descendants of a given organism. The data were stored in mysql.

Pierre Lindenbaum


----- Message d'origine ----
De : Andrea Splendiani <andrea.splendiani@bbsrc.ac.uk>
À : public-semweb-lifesci hcls <public-semweb-lifesci@w3.org>
Envoyé le : Mercredi, 25 Février 2009, 20h58mn 55s
Objet : Is there  an NCBI taxonomy in OWL ?

Hi,

I was looking for an NCBI Taxnomoy in OWL, but I didn't find it (or better, could find fragment from other projects...)

What is strange though, is that on the obo foundry website (berkeleybop.org/ontologies) there are notes on the ncbi taxonomy representation in owl... but not the representation itself.

Does anybody have some hint about where I can fin an OWL version ? Or even an RDF version ? Even better would a sparql endpoint containing it...

best,
Andrea Splendiani


      
Received on Friday, 27 February 2009 13:49:17 GMT

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